View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21511_low_6 (Length: 328)
Name: NF21511_low_6
Description: NF21511
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21511_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 27 - 309
Target Start/End: Complemental strand, 953544 - 953252
Alignment:
| Q |
27 |
ttctttattaatttattctatgacataatataattatcgcacatgaagtctgcaagatgaacaatc------------ttcccctaaaaatatccacggt |
114 |
Q |
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| T |
953544 |
ttctttactaatttattttatgacataatataattatcgcacatgaagtctgcaagatgaacaatccacgggttaatcttcccctaaaaatatccacggt |
953445 |
T |
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| Q |
115 |
ttatactatctatggttaattaaatgattttttctctctaataattttatatgtgttggatttagatttaggagcttaattaagacacatcttaatattc |
214 |
Q |
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| T |
953444 |
ttatactatctatggttaattaaatgatttttttt-tctaataattttacatgtgttggatttagatt-aggagcttaattaagacacatcttaagactc |
953347 |
T |
|
| Q |
215 |
atagaacacttgaaaagaaacaacttgcgtaaaacctactaaaaagaccattacattgacaacgtatattgaagtcacgtttatatacaatacga |
309 |
Q |
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|||||||||||||||||||| || ||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| | ||||| |||||| |
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| T |
953346 |
atagaacacttgaaaagaaataatttgcgtagaacctactaaaaagaccattgcattgacaacatatattgaagtcacgtctctatacgatacga |
953252 |
T |
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