View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21512_high_5 (Length: 237)

Name: NF21512_high_5
Description: NF21512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21512_high_5
NF21512_high_5
[»] chr5 (3 HSPs)
chr5 (93-168)||(18259745-18259820)
chr5 (61-105)||(36603640-36603684)
chr5 (66-102)||(5411913-5411949)
[»] chr3 (5 HSPs)
chr3 (66-170)||(50384589-50384692)
chr3 (65-152)||(23670422-23670509)
chr3 (65-152)||(24042698-24042785)
chr3 (98-170)||(40397451-40397520)
chr3 (70-106)||(50121164-50121200)
[»] chr2 (4 HSPs)
chr2 (98-170)||(38204679-38204753)
chr2 (109-170)||(6621469-6621530)
chr2 (64-112)||(25833-25881)
chr2 (63-112)||(21348913-21348962)
[»] chr8 (2 HSPs)
chr8 (118-170)||(8108007-8108059)
chr8 (64-105)||(9799198-9799239)
[»] chr7 (3 HSPs)
chr7 (57-112)||(40234656-40234711)
chr7 (2-64)||(3929557-3929619)
chr7 (59-106)||(30703822-30703869)
[»] chr1 (6 HSPs)
chr1 (63-105)||(26127373-26127415)
chr1 (97-170)||(15892146-15892222)
chr1 (97-170)||(17872534-17872606)
chr1 (66-121)||(25113901-25113956)
chr1 (52-105)||(36781826-36781879)
chr1 (65-105)||(19940548-19940588)
[»] chr4 (4 HSPs)
chr4 (88-150)||(31938218-31938282)
chr4 (54-102)||(38068825-38068873)
chr4 (66-102)||(47089324-47089360)
chr4 (65-112)||(26784689-26784736)
[»] scaffold0227 (1 HSPs)
scaffold0227 (123-170)||(4786-4833)
[»] chr6 (1 HSPs)
chr6 (63-107)||(14158276-14158320)


Alignment Details
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 18259745 - 18259820
Alignment:
Q  93 actagttaaggaagttaaaagagagttttgaattaaaaatgtcactttttatagttttaagaccttgaatgcacaa 168  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||    
T  18259745 actagttaaagaagttaaaagagagttttgaattaaaaatgtcattttttatactttttagaccttgaatgcacaa 18259820  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Original strand, 36603640 - 36603684
Alignment:
Q  61 aaatgggtcatgttaaccagtgcccccggggaactagttaaggaa 105  Q
    ||||||||||||||||||||| |||| |||| |||||||||||||    
T  36603640 aaatgggtcatgttaaccagtaccccgggggcactagttaaggaa 36603684  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 5411913 - 5411949
Alignment:
Q  66 ggtcatgttaaccagtgcccccggggaactagttaag 102  Q
    |||||||||||||||||||  ||||||||||||||||    
T  5411913 ggtcatgttaaccagtgccttcggggaactagttaag 5411949  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 50384589 - 50384692
Alignment:
Q  66 ggtcatgttaaccagtgcccccggggaactagttaaggaagttaaaagaga--gttttgaattaaaaatgtcactttttatagttttaagaccttgaatg 163  Q
    ||||||||||||| ||||||   ||  ||| ||||||||||||||||||||  ||||| ||||||||||||||||||||||| |||||||||||||||||    
T  50384589 ggtcatgttaaccggtgccc---ggacactggttaaggaagttaaaagagaaagttttaaattaaaaatgtcactttttatacttttaagaccttgaatg 50384685  T
Q  164 cacaagt 170  Q
    |||||||    
T  50384686 cacaagt 50384692  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 23670422 - 23670509
Alignment:
Q  65 gggtcatgttaaccagtgcccccggggaactagttaaggaagttaaaagaga--gttttgaattaaaaatgtcactttttatagttttaa 152  Q
    ||||||| ||||||| |||  |||||| ||||||||||||||||||||||||  ||||| ||||  ||||||||||||||||| ||||||    
T  23670422 gggtcattttaaccaatgcgtccggggcactagttaaggaagttaaaagagaaggttttaaatt--aaatgtcactttttatacttttaa 23670509  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 65 - 152
Target Start/End: Original strand, 24042698 - 24042785
Alignment:
Q  65 gggtcatgttaaccagtgcccccggggaactagttaaggaagttaaaagaga--gttttgaattaaaaatgtcactttttatagttttaa 152  Q
    ||||||| ||||||| |||  |||||| ||||||||||||||||||||||||  ||||| ||||  ||||||||||||||||| ||||||    
T  24042698 gggtcattttaaccaatgcgtccggggcactagttaaggaagttaaaagagaaggttttaaatt--aaatgtcactttttatacttttaa 24042785  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 40397451 - 40397520
Alignment:
Q  98 ttaaggaagttaaaagaga--gttttgaattaaaaatgtcactttttatagttttaagaccttgaatgcacaagt 170  Q
    |||||||||||||||||||  ||||| |||| ||||||||||||||||     |||| |||||||||||||||||    
T  40397451 ttaaggaagttaaaagagaaagttttaaatttaaaatgtcacttttta-----ttaaaaccttgaatgcacaagt 40397520  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 106
Target Start/End: Complemental strand, 50121200 - 50121164
Alignment:
Q  70 atgttaaccagtgcccccggggaactagttaaggaag 106  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  50121200 atgttaaccaatgcccccggggcactagttaaggaag 50121164  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 38204753 - 38204679
Alignment:
Q  98 ttaaggaagttaaaagaga--gttttgaattaaaaatgtcactttttatagttttaagaccttgaatgcacaagt 170  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||  ||||||||||||||    
T  38204753 ttaaggaagttaaaagagaaagttttgaattaaaaatgtcactttttatacttttaagattttgaatgcacaagt 38204679  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 6621469 - 6621530
Alignment:
Q  109 aaaagagagttttgaattaaaaatgtcactttttatagttttaagaccttgaatgcacaagt 170  Q
    |||||| ||||||  ||||||||||||||| |||||| ||||||||| ||||||||||||||    
T  6621469 aaaagaaagttttatattaaaaatgtcactctttatatttttaagactttgaatgcacaagt 6621530  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 25833 - 25881
Alignment:
Q  64 tgggtcatgttaaccagtgcccccggggaactagttaaggaagttaaaa 112  Q
    ||||||||| |||| |||||||| ||||||||||||||||||| |||||    
T  25833 tgggtcatgctaacaagtgcccctggggaactagttaaggaagctaaaa 25881  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 21348913 - 21348962
Alignment:
Q  63 atgggtcatgttaaccagtgcccccggggaactagttaaggaagttaaaa 112  Q
    |||||||||| |||| ||||||||  |||||||||||||||||| |||||    
T  21348913 atgggtcatgctaacaagtgcccctagggaactagttaaggaagctaaaa 21348962  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 8108059 - 8108007
Alignment:
Q  118 ttttgaattaaaaatgtcactttttatagttttaagaccttgaatgcacaagt 170  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||| ||||    
T  8108059 ttttaaattaaaaatgtcacattttatacttttaagaccttgaatgcataagt 8108007  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 105
Target Start/End: Original strand, 9799198 - 9799239
Alignment:
Q  64 tgggtcatgttaaccagtgcccccggggaactagttaaggaa 105  Q
    ||||||||||||||||||||||||| || ||| |||||||||    
T  9799198 tgggtcatgttaaccagtgcccccgtggcactggttaaggaa 9799239  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 112
Target Start/End: Complemental strand, 40234711 - 40234656
Alignment:
Q  57 ataaaaatgggtcatgttaaccagtgcccccggggaactagttaaggaagttaaaa 112  Q
    |||||||||||||||||||||| |||| ||||||| ||| ||||||||| ||||||    
T  40234711 ataaaaatgggtcatgttaaccggtgctcccggggcactggttaaggaatttaaaa 40234656  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 3929619 - 3929557
Alignment:
Q  2 gtccatactaatgccgatctgcaatatatcagtaaaattattagcaccagactaaataaaaat 64  Q
    |||||||| ||||| |||||||| ||||||||||||| |||  |||||||||||||| |||||    
T  3929619 gtccataccaatgctgatctgcagtatatcagtaaaagtataggcaccagactaaatcaaaat 3929557  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 30703869 - 30703822
Alignment:
Q  59 aaaaatgggtcatgttaaccagtgcccccggggaactagttaaggaag 106  Q
    ||||| ||||||||||||||| ||||||||||| ||| ||||||||||    
T  30703869 aaaaaagggtcatgttaaccaatgcccccggggcactggttaaggaag 30703822  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 26127415 - 26127373
Alignment:
Q  63 atgggtcatgttaaccagtgcccccggggaactagttaaggaa 105  Q
    ||||||| ||||||||||||||||||||| |||||||||||||    
T  26127415 atgggtcttgttaaccagtgcccccggggcactagttaaggaa 26127373  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 15892146 - 15892222
Alignment:
Q  97 gttaaggaagttaaaa-gag--agttttgaattaaaaatgtcactttttatagttttaagaccttgaatgcacaagt 170  Q
    |||||||||||||||| |||  |||||| |||||||||| |||||||||||| ||| |||||||| |||| ||||||    
T  15892146 gttaaggaagttaaaaagaggaagttttaaattaaaaatatcactttttatactttcaagaccttaaatgtacaagt 15892222  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 170
Target Start/End: Complemental strand, 17872606 - 17872534
Alignment:
Q  97 gttaaggaagttaaaagagagttttgaattaaaaatgtcactttttatagttttaagaccttgaatgcacaagt 170  Q
    |||||||||||||| ||| | |||| ||||||||| |||| | |||||| |||||| |||||||||||||||||    
T  17872606 gttaaggaagttaagagaaaattttaaattaaaaaagtcaatatttatacttttaa-accttgaatgcacaagt 17872534  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 25113956 - 25113901
Alignment:
Q  66 ggtcatgttaaccagtgcccccggggaactagttaaggaagttaaaagagagtttt 121  Q
    ||||||||||||||||||| |||||  ||||||||||||||| |||| ||| ||||    
T  25113956 ggtcatgttaaccagtgcctccgggacactagttaaggaagtaaaaatagaatttt 25113901  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 36781826 - 36781879
Alignment:
Q  52 actaaataaaaatgggtcatgttaaccagtgcccccggggaactagttaaggaa 105  Q
    ||||| |||| ||||||| |||||||| ||||||||| || |||||||||||||    
T  36781826 actaattaaatatgggtcctgttaaccggtgcccccgaggcactagttaaggaa 36781879  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 19940548 - 19940588
Alignment:
Q  65 gggtcatgttaaccagtgcccccggggaactagttaaggaa 105  Q
    |||||||||||||| |||||||||||| ||| |||||||||    
T  19940548 gggtcatgttaaccggtgcccccggggcactggttaaggaa 19940588  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 31938282 - 31938218
Alignment:
Q  88 ggggaactagttaaggaagttaaaagaga--gttttgaattaaaaatgtcactttttatagtttt 150  Q
    |||| ||| |||||| |||||||||||||  ||||| ||||||||||||||||||||||| ||||    
T  31938282 ggggcactggttaagaaagttaaaagagaaagttttaaattaaaaatgtcactttttatactttt 31938218  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 38068825 - 38068873
Alignment:
Q  54 taaataaaaatgggtcatgttaaccagtgcccccggggaactagttaag 102  Q
    |||| ||||| ||||||||||||| ||||||||||||| ||||||||||    
T  38068825 taaaaaaaaaagggtcatgttaactagtgcccccggggcactagttaag 38068873  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 47089360 - 47089324
Alignment:
Q  66 ggtcatgttaaccagtgcccccggggaactagttaag 102  Q
    |||||||||||||||||||||||||| ||||||||||    
T  47089360 ggtcatgttaaccagtgcccccggggcactagttaag 47089324  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 26784689 - 26784736
Alignment:
Q  65 gggtcatgttaaccagtgcccccggggaactagttaaggaagttaaaa 112  Q
    ||||||||||||| ||||||||||||| |||||||||| |||| ||||    
T  26784689 gggtcatgttaactagtgcccccggggcactagttaagaaagtaaaaa 26784736  T

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Target: scaffold0227 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 4833 - 4786
Alignment:
Q  123 aattaaaaatgtcactttttatagttttaagaccttgaatgcacaagt 170  Q
    |||||||||||||| |||||||| |||||| | |||||||||||||||    
T  4833 aattaaaaatgtcaatttttatacttttaaaatcttgaatgcacaagt 4786  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 14158276 - 14158320
Alignment:
Q  63 atgggtcatgttaaccagtgcccccggggaactagttaaggaagt 107  Q
    |||||||||||||||| |||||||||||  |||||||||| ||||    
T  14158276 atgggtcatgttaacctgtgcccccgggacactagttaagaaagt 14158320  T

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