View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21512_low_1 (Length: 590)
Name: NF21512_low_1
Description: NF21512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21512_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Complemental strand, 4665141 - 4664667
Alignment:
| Q |
1 |
gctgaaaaagttttgggaactgaaggtctagaaaatatcaaagttgttggttgcaggaatatgaaggacgttatcaacactatatttcctaatgtgatga |
100 |
Q |
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| T |
4665141 |
gctgaaaaagttttgggaactgaaggtctagaaaatatcaaagttgttggttgcaggaatctgaaggacgttatcaacactatatttcctaatgtgatga |
4665042 |
T |
|
| Q |
101 |
gaagaagcaagtaaattgtcacactagggtgtttgtgttgtggagatacctatataaatttgtaaatgtgttatgtaaaatatgattcattataattaat |
200 |
Q |
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| T |
4665041 |
gaagaagcaagtaaattgtcacactagggtgtttgtgttgtggagatacctatataaatttgtaaatgtgttatgtaaaatatgattcattataattaat |
4664942 |
T |
|
| Q |
201 |
atgcacgtagtgtttcttctttttggtgtgaagtaacttgtgtataggttacatatcgttagatac--------atgattttcctttttcttgacaaaac |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
4664941 |
atgcacgtagtgtttcttctttttggtgtgaagtaacttgtgtataggttacatatcgttagatacatactggtatgattttcctttttcttgacataac |
4664842 |
T |
|
| Q |
293 |
ttgtatggttttattgaagatatattatccaatttctctttttccagaatctctcttataatctgcatatctacgatgctgtaaaggatccatgtaaatg |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4664841 |
ttgtatggttttattgaagatatattatccaatttctctttttccagaatctctcttataatctgcatatctacgatgctgtaaaggatccatgtaaatg |
4664742 |
T |
|
| Q |
393 |
gaagaatcatgagaaattaaataaatttagttggttcatttattaaattttgaaatggtgaaaccaacatggtct |
467 |
Q |
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| T |
4664741 |
gaagaatcgtgagaaattaaataaatttagttggttcatttattaaattttgaaatggtgaaaccaacatggtct |
4664667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 465 - 572
Target Start/End: Complemental strand, 4664596 - 4664489
Alignment:
| Q |
465 |
tctcatgtgaaacacattaaatgtattgatgtcgatttaaggattagtcttatagttaatctaaagggtctaagccgtgtgatattttaagatgtctaat |
564 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
4664596 |
tctcatgtgaaacatattaaatgtattgatgtcgatttaaagattagtcttatagttaatttaaagggtctaagccgtgtgatattttaagatgtttaat |
4664497 |
T |
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| Q |
565 |
ggaagtca |
572 |
Q |
| |
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||||||| |
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| T |
4664496 |
tgaagtca |
4664489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 43267526 - 43267588
Alignment:
| Q |
6 |
aaaagttttgggaactgaaggtctagaaaatatcaaagttgttggttgcaggaatatgaagga |
68 |
Q |
| |
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||||| ||| ||||||||||||||||||||||| ||||| || ||||||| |||| ||||||| |
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| T |
43267526 |
aaaagctttaggaactgaaggtctagaaaatattaaagtagtaggttgcaagaatctgaagga |
43267588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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