View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21512_low_2 (Length: 366)
Name: NF21512_low_2
Description: NF21512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21512_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 6 - 360
Target Start/End: Original strand, 40205022 - 40205371
Alignment:
| Q |
6 |
cgaaaaatatatccacaatatgtcataatatacccaatagagagatcctaaggtcttcttgactccaaaccaacaaatttggtttgtattttattttaag |
105 |
Q |
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| T |
40205022 |
cgaaaagtatatccacaatatgtcataatatacccaatagagagatcctaaggtcttcttgactccaaaccaacaaatttggtttgtatttta-----ag |
40205116 |
T |
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| Q |
106 |
acgaggagcaagaaagnnnnnnntagaaaaacattaagagacatgtttggagaggttaaaagttgattggagaaagtggcagacataaattagacagggt |
205 |
Q |
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| T |
40205117 |
acgaggagcaagaaagaaaaaaatagaaaaacattaagagacatgtttggagaggttaaaagttgattggagaaagtggcagacataaattagacagggt |
40205216 |
T |
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| Q |
206 |
taatacaagaagggagcttatggaccataccatattcataagctataaaggaccaatatatatcctcatggaccttgtaggtcaggctgactgagccatt |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
40205217 |
taatacaagaagggagcttatggaccataccatattcataagctataaaggaccaatataaatcctcatggaccttgtaggtcaggctgactgagccata |
40205316 |
T |
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| Q |
306 |
ttctatgagatttgctgtcggtatggcgttctatgcgcccaaacaacttagtctg |
360 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40205317 |
ttctatgagatttgctgtcggtatggcgttctatgcgcccaaacaacttagtctg |
40205371 |
T |
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