View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21512_low_6 (Length: 236)
Name: NF21512_low_6
Description: NF21512
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21512_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 386057 - 385838
Alignment:
| Q |
1 |
agccacctcaaagcaagatcaaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacagaatatcccatggtcttcatttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
386057 |
agccacctcaaagcaagatcaaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacagaatatcccatcgtcttcatttcaa |
385958 |
T |
|
| Q |
101 |
gtagaactttggcagcaacatccacaagcttcttattagccagtagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
385957 |
gtagaactttggcagcaacatccacaagcttcttattagccagtagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcat |
385858 |
T |
|
| Q |
201 |
tgaattgtacagtttgatgg |
220 |
Q |
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||||||||||||||| |||| |
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| T |
385857 |
tgaattgtacagtttcatgg |
385838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38729485 - 38729699
Alignment:
| Q |
1 |
agccacctcaaagcaagatcaaccgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacagaatatcccatggtcttcatttcaa |
100 |
Q |
| |
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||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
38729485 |
agccatctcaaagcaagatcgactgaaccttccttgatatacaccatcaaaacatcactagctgtcacatccacagaatatcccattgtcttcatttcaa |
38729584 |
T |
|
| Q |
101 |
gtagaactttggcagcaacatccacaagcttcttattagccagtagagataaaagaacagtgtaagtgcttaggcctggccttaaacctgcattagtcat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
38729585 |
gtagaactttggcagcaacatccaccagcttcttattagcaagtagagataaaagaacagtataagtgctcaggcctggccttaaacctgcattagtcat |
38729684 |
T |
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| Q |
201 |
tgaattgtacagttt |
215 |
Q |
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||||||||||||||| |
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| T |
38729685 |
tgaattgtacagttt |
38729699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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