View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21513_high_11 (Length: 551)

Name: NF21513_high_11
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21513_high_11
NF21513_high_11
[»] chr1 (5 HSPs)
chr1 (129-539)||(8141805-8142208)
chr1 (23-139)||(8142221-8142338)
chr1 (130-226)||(4931654-4931749)
chr1 (23-72)||(7501128-7501177)
chr1 (196-280)||(18375038-18375123)
[»] chr5 (3 HSPs)
chr5 (348-514)||(22210106-22210273)
chr5 (381-485)||(5351790-5351895)
chr5 (82-139)||(22209802-22209859)
[»] chr2 (3 HSPs)
chr2 (379-514)||(9130594-9130730)
chr2 (80-330)||(9130812-9131066)
chr2 (381-464)||(31037298-31037381)
[»] chr4 (5 HSPs)
chr4 (381-470)||(34730207-34730297)
chr4 (196-273)||(1492102-1492180)
chr4 (90-138)||(1530418-1530466)
chr4 (89-139)||(1492294-1492344)
chr4 (210-273)||(1514798-1514862)
[»] chr7 (1 HSPs)
chr7 (381-466)||(17907155-17907241)
[»] chr3 (6 HSPs)
chr3 (381-458)||(34786053-34786131)
chr3 (381-485)||(20166768-20166873)
chr3 (381-485)||(47652330-47652434)
chr3 (80-139)||(54256587-54256646)
chr3 (295-341)||(47953982-47954028)
chr3 (156-188)||(41514446-41514478)
[»] chr6 (1 HSPs)
chr6 (376-514)||(490848-490991)


Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 129 - 539
Target Start/End: Complemental strand, 8142208 - 8141805
Alignment:
Q  129 caaatagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgctaacacacaaatagaagttacataaacagaaatttaaaatg 228  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8142208 caaagagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgcgaacacacaaatagaagttacataaacagaaatttaaaatg 8142109  T
Q  229 acttcatataaaacaaaaaatctcaatagttaaacaactagtaaagcatgatatatgcataaattattgcagaaagccattaacagaaattaaaagtgac 328  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||    
T  8142108 acttcatataaaacaaaaaatctccatagttaaacaactagtaaagcatg----atgcataaattattgcagaaagccattaacagaaattaaaagtgac 8142013  T
Q  329 ttaaaactcaaaaaatctaaataattggtagttttaagttctaatcggtgataaaagatctaattattctcctcttctccaacataatattatcctcatt 428  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||||||||||    
T  8142012 ttaaaactcaaaaaatctaaataattggtagttttaagttttaatcggtgataaaagatctaattatt---ctcttctccaacataatattatcctcatt 8141916  T
Q  429 ttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatcaatgtcctcaaactctgcttctgattctaccaagataggttttaggtac 528  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||    
T  8141915 ttcagataatgaggcatatccttcaacttcttcaattgaatcatcggaatcaatgtcctcaaactctgcttctgattccaccaagatagatttttggtac 8141816  T
Q  529 tatattcttgg 539  Q
    |||||| ||||    
T  8141815 tatattattgg 8141805  T

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Target: chr1; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 23 - 139
Target Start/End: Complemental strand, 8142338 - 8142221
Alignment:
Q  23 gactatgtatggcttgaagattgtacttcatctattcttgatatgtaattcctatcgattaatatcggatcgtggaaaatattggattgcca-aaaatcc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  8142338 gactatgtatggcttgaagattgtacttcatctattcttgatatgtaattcctatctattaatatcggatcgtggaaaatattggattgccaaaaaatcc 8142239  T
Q  122 aatatgacaaatagcgga 139  Q
    ||||||||||||||||||    
T  8142238 aatatgacaaatagcgga 8142221  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 130 - 226
Target Start/End: Original strand, 4931654 - 4931749
Alignment:
Q  130 aaatagcggaaactgcaaaactgttcaaataaataattatgtataaaataaagcatgctaacacacaaatagaagttacataaacagaaatttaaaa 226  Q
    |||||| |||| ||||| | ||||| |||||||||||||| |||||||||||||||| |  |||||||||| ||  ||||||| |||||||||||||    
T  4931654 aaatagtggaagctgcacacctgttgaaataaataattatatataaaataaagcatg-ttgcacacaaataaaaactacataaccagaaatttaaaa 4931749  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 23 - 72
Target Start/End: Original strand, 7501128 - 7501177
Alignment:
Q  23 gactatgtatggcttgaagattgtacttcatctattcttgatatgtaatt 72  Q
    |||||||||||||||||||| |||||||||| ||||||||| ||||||||    
T  7501128 gactatgtatggcttgaagaatgtacttcatgtattcttgacatgtaatt 7501177  T

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Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 196 - 280
Target Start/End: Complemental strand, 18375123 - 18375038
Alignment:
Q  196 aaatagaagttacataaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaagcatgat 280  Q
    ||||| ||| |||||||||||||||| |||||||||| | |||||||  ||||||||||||||| |||||| |  |||||||||||    
T  18375123 aaataaaagctacataaacagaaattaaaaatgacttgacataaaactcaaaatctcaatagttcaaacaaatgataaagcatgat 18375038  T

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Target: chr5 (Bit Score: 100; Significance: 3e-49; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 348 - 514
Target Start/End: Original strand, 22210106 - 22210273
Alignment:
Q  348 aataattggtagttttaagttctaatcggtgataaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcata 446  Q
    |||||||||||||| ||||||||||   |||||||||||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||| |    
T  22210106 aataattggtagttctaagttctaactagtgataaaagatatagttattctcctcttccccaacataatcattatcctcattttcagatagtgaggcaca 22210205  T
Q  447 tccttcaacttcttcaattgaatcatcggaatcaatgtcctcaaactctgcttctgattctaccaaga 514  Q
    ||||||||||||||| |||||||||||  ||||||| |||||||||||| |||| |||||||| ||||    
T  22210206 tccttcaacttcttctattgaatcatctaaatcaatatcctcaaactctacttccgattctactaaga 22210273  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 381 - 485
Target Start/End: Complemental strand, 5351895 - 5351790
Alignment:
Q  381 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatc 479  Q
    |||||||| |||||||||||||||| |||||||||| ||||||| ||||| || |||||||||||||||||||||||||||||| |||||| || |||||    
T  5351895 aaaagatccaattattctcctcttccccaacataatcattatccccatttccacatagtgaggcatatccttcaacttcttcaactgaatcctcagaatc 5351796  T
Q  480 aatgtc 485  Q
    ||||||    
T  5351795 aatgtc 5351790  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 22209802 - 22209859
Alignment:
Q  82 taatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 139  Q
    ||||||| ||||  |||||||||||||| ||||||||||| |||||||||||||||||    
T  22209802 taatatctgatcacggaaaatattggatcgccaaaaatccgatatgacaaatagcgga 22209859  T

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Target: chr2 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 379 - 514
Target Start/End: Complemental strand, 9130730 - 9130594
Alignment:
Q  379 ataaaagatctaattattctcctcttctccaacataata-ttatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaa 477  Q
    ||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||| ||| |||||||||||||||||||  || |||    
T  9130730 ataaaagatctaattattctcctcttccccaacataataattgtcctcattttcagatagtgaggcatttccgtcaacttcttcaattgaattgtctgaa 9130631  T
Q  478 tcaatgtcctcaaactctgcttctgattctaccaaga 514  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  9130630 tcaatttccttaaactctgcttctgattctaccaaga 9130594  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 80 - 330
Target Start/End: Complemental strand, 9131066 - 9130812
Alignment:
Q  80 attaatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcggaaactgcaaaactgttcaaataaataattatgtataaaata 179  Q
    |||||||||| |||| |||||||||  ||| ||||||||| | |||||| | |||||| || |  |||||| |||||||||||||||||| |||||||||    
T  9131066 attaatatcgtatcgcggaaaatatcagatcgccaaaaattcgatatgatacatagcgtaagccacaaaacggttcaaataaataattatatataaaata 9130967  T
Q  180 aagcatgctaacacacaaatagaagttacataaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaagcatg 278  Q
    ||||||||| ||| ||||||| ||| ||   ||||||||||| ||||||| || ||||| |||  ||||||||||||||| |||||||||||| | | ||    
T  9130966 aagcatgct-acaaacaaataaaagctaaccaaacagaaattaaaaatgaattgatatacaacttaaaatctcaatagttcaaacaactagtagaacctg 9130868  T
Q  279 ----atatatgcataaattattgcagaaagccattaacagaaattaaaagtgactt 330  Q
        |||  |||| | |||||||||||||||||| | |||||||||||||||||||    
T  9130867 gtgcatagttgcacacattattgcagaaagccataagcagaaattaaaagtgactt 9130812  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 464
Target Start/End: Original strand, 31037298 - 31037381
Alignment:
Q  381 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaat 464  Q
    |||||||||| |||||||| ||||| ||| |||||| ||||||| |||  | |||| ||||||||||||||||||||| ||||||    
T  31037298 aaaagatctatttattctcttcttccccagcataatcattatccacatact-agatcgtgaggcatatccttcaactttttcaat 31037381  T

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Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 381 - 470
Target Start/End: Original strand, 34730207 - 34730297
Alignment:
Q  381 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatc 470  Q
    ||||||||||||||||||||||||| | ||||| || ||||||||||||||||||||||||||||||||||||||||| || ||| |||||    
T  34730207 aaaagatctaattattctcctcttccctaacatcatcattatcctcattttcagatagtgaggcatatccttcaactttttaaatggaatc 34730297  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 273
Target Start/End: Complemental strand, 1492180 - 1492102
Alignment:
Q  196 aaatagaagttacataaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaa 273  Q
    ||||| ||| ||| |||||||||||| |||||||||| |||||||||  ||||| ||||||||| ||||||||||||||    
T  1492180 aaataaaagctacctaaacagaaattaaaaatgacttgatataaaactcaaaatttcaatagttcaaacaactagtaaa 1492102  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 1530466 - 1530418
Alignment:
Q  90 gatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgg 138  Q
    ||||||||||| ||| |||| |||||||||||||||| |||||||||||    
T  1530466 gatcgtggaaagtatcggatcgccaaaaatccaatataacaaatagcgg 1530418  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 1492344 - 1492294
Alignment:
Q  89 ggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 139  Q
    |||||| ||||||||| |||| ||||||||||| |||| ||||||||||||    
T  1492344 ggatcgcggaaaatataggatcgccaaaaatccgatataacaaatagcgga 1492294  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 273
Target Start/End: Complemental strand, 1514862 - 1514798
Alignment:
Q  210 taaacagaaatttaaaatgacttcatataaaacaaaaaatctcaatagtt-aaacaactagtaaa 273  Q
    ||||||||||||||||||||||| |  | ||||  ||||| ||||||||| ||||||||||||||    
T  1514862 taaacagaaatttaaaatgacttgacgttaaactcaaaatttcaatagttcaaacaactagtaaa 1514798  T

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Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 381 - 466
Target Start/End: Original strand, 17907155 - 17907241
Alignment:
Q  381 aaaagatctaattattctcctcttctccaacataata-ttatcctcattttcagatagtgaggcatatccttcaacttcttcaattg 466  Q
    |||||||||||||| |||||||||| | ||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  17907155 aaaagatctaattactctcctcttcccaaacataataattatcttcattttcagatagtgaggcatatcgttcaacttcttaaattg 17907241  T

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Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 381 - 458
Target Start/End: Original strand, 34786053 - 34786131
Alignment:
Q  381 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttc 458  Q
    ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||||| ||||||||||||    
T  34786053 aaaagatctaattattctcctcttccccaacataatcattatcctcattttcagttagttaggcatctccttcaacttc 34786131  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 381 - 485
Target Start/End: Complemental strand, 20166873 - 20166768
Alignment:
Q  381 aaaagatctaattattctcctcttctccaacataat-attatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatc 479  Q
    |||||||||||||||| |||| ||  | |||||||| ||||||||||||||  |||||||||||||||||||||||||||| ||| ||||| || |||||    
T  20166873 aaaagatctaattattttcctatttcctaacataatcattatcctcattttgcgatagtgaggcatatccttcaacttcttaaatagaatcctcagaatc 20166774  T
Q  480 aatgtc 485  Q
    ||||||    
T  20166773 aatgtc 20166768  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 381 - 485
Target Start/End: Original strand, 47652330 - 47652434
Alignment:
Q  381 aaaagatctaattattctcctcttctccaacataata-ttatcctcattttcagatagtgaggcatatccttcaacttcttcaattgaatcatcggaatc 479  Q
    ||||||||||| |||||||||||||  |||||||||  ||||| ||||||| ||||||||||||||||||||||||||||| || |||||| | | ||||    
T  47652330 aaaagatctaactattctcctcttccacaacataatcgttatcttcatttttagatagtgaggcatatccttcaacttctt-aaatgaatccttgtaatc 47652428  T
Q  480 aatgtc 485  Q
    ||||||    
T  47652429 aatgtc 47652434  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 139
Target Start/End: Original strand, 54256587 - 54256646
Alignment:
Q  80 attaatatcggatcgtggaaaatattggattgccaaaaatccaatatgacaaatagcgga 139  Q
    ||||||| ||||||||||||||||| |||| ||||||||||   ||||| ||||||||||    
T  54256587 attaatagcggatcgtggaaaatatcggatcgccaaaaatctgctatgagaaatagcgga 54256646  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 47953982 - 47954028
Alignment:
Q  295 ttgcagaaagccattaacagaaattaaaagtgacttaaaactcaaaa 341  Q
    |||||||||||||  |||| ||||||||| |||||||||||||||||    
T  47953982 ttgcagaaagccagaaacataaattaaaaatgacttaaaactcaaaa 47954028  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 156 - 188
Target Start/End: Original strand, 41514446 - 41514478
Alignment:
Q  156 aaataaataattatgtataaaataaagcatgct 188  Q
    |||||||||||||| ||||||||||||||||||    
T  41514446 aaataaataattatatataaaataaagcatgct 41514478  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 376 - 514
Target Start/End: Original strand, 490848 - 490991
Alignment:
Q  376 gtgataaaagatctaattattctcctcttctcc-aacataat-attatcctcatt---ttcagatagtgaggcatatccttcaacttcttcaattgaatc 470  Q
    |||||||||||||||||||| ||||||||| || |||||||| ||||||||| ||   ||||| |  ||| |||||||  ||||||| ||||||||||||    
T  490848 gtgataaaagatctaattatgctcctcttcccccaacataatcattatcctcgttgttttcaggttttgaagcatatctgtcaactttttcaattgaatc 490947  T
Q  471 atcggaatcaatgtcctcaaactctgcttctgattctaccaaga 514  Q
    | | |||||||| ||||| |||||||||| ||||| ||||||||    
T  490948 acctgaatcaatatcctctaactctgcttttgattataccaaga 490991  T

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