View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21513_high_13 (Length: 527)

Name: NF21513_high_13
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21513_high_13
NF21513_high_13
[»] chr3 (3 HSPs)
chr3 (8-496)||(51120071-51120560)
chr3 (261-295)||(51112886-51112920)
chr3 (358-407)||(51112969-51113018)
[»] chr5 (4 HSPs)
chr5 (262-306)||(41886292-41886336)
chr5 (359-414)||(28660967-28661022)
chr5 (266-308)||(41900191-41900233)
chr5 (266-304)||(32268880-32268918)
[»] chr2 (1 HSPs)
chr2 (261-308)||(45244521-45244568)
[»] chr4 (9 HSPs)
chr4 (266-304)||(566754-566792)
chr4 (361-413)||(6007659-6007711)
chr4 (269-304)||(1524000-1524035)
chr4 (261-308)||(1537246-1537293)
chr4 (266-308)||(1488824-1488866)
chr4 (266-307)||(12120920-12120961)
chr4 (272-308)||(554097-554133)
chr4 (252-308)||(645445-645501)
chr4 (353-409)||(1547461-1547517)
[»] chr1 (1 HSPs)
chr1 (252-308)||(9582031-9582087)
[»] chr6 (4 HSPs)
chr6 (261-308)||(9412450-9412497)
chr6 (361-414)||(28935566-28935619)
chr6 (267-307)||(6403935-6403975)
chr6 (267-307)||(6433172-6433212)
[»] chr8 (1 HSPs)
chr8 (266-308)||(17642614-17642656)
[»] chr7 (1 HSPs)
chr7 (266-303)||(10616209-10616246)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 8 - 496
Target Start/End: Original strand, 51120071 - 51120560
Alignment:
Q  8 ttttggaatatttatatcttatcctttgatgtttt-annnnnnnnnacacggtatcatctcttgattctgtctcacttttaatattgttcgtataagttt 106  Q
    |||||||||||||||||||||||||||||| |||| |         ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120071 ttttggaatatttatatcttatcctttgatttttttatttttttttacaaggtatcatctcttgattctgtctcacttttaatattgttcgtataagttt 51120170  T
Q  107 aacctaatcttaaacttgcaaaccctcacagatagcacaactgtcaccggcagcaaccacgtcaatatgaaaagaaagagaagtaactctctcaaatctt 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120171 aacctaatcttaaacttgcaaaccctcacagatagcacaactgtcaccggcagcaaccacgtcaatatgaaaagaaagagaagtaactctctcaaatctt 51120270  T
Q  207 cccaacaacaattgttttcttcttccacaaaaacgacaacaattacagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcct 306  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120271 cccaacaacaattgttttcttcttccacaaaaacgacaaccattacagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcct 51120370  T
Q  307 cacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtctcgaagcagttcctctctatcaccaaccttctctgattctctc 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51120371 cacctatatggcaacggtaacatcagcaacagctacttgaaacgtctatccgttgtctcgaagcagttcctctctatcaccaaccttctccgattctctc 51120470  T
Q  407 tcactatacgtgctccaaagcacttttgtttccttcgtcgtctcttccatagattctccaaccttaactccctcaacctttcgatatact 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51120471 tcactatacgtgctccaaagcacttttgtttccttcgtcgtctcttccatagattctccaaccttaattccctcaacctttcgatatact 51120560  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 261 - 295
Target Start/End: Original strand, 51112886 - 51112920
Alignment:
Q  261 atttctatttacctgatgactgttgggaatgtgtc 295  Q
    |||||||||||||||||||||||||||||| ||||    
T  51112886 atttctatttacctgatgactgttgggaatatgtc 51112920  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 407
Target Start/End: Original strand, 51112969 - 51113018
Alignment:
Q  358 gttgtctcgaagcagttcctctctatcaccaaccttctctgattctctct 407  Q
    ||||||||||| | ||||||||| |||||||||| |||| ||||||||||    
T  51112969 gttgtctcgaaacggttcctctccatcaccaaccgtctccgattctctct 51113018  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 262 - 306
Target Start/End: Original strand, 41886292 - 41886336
Alignment:
Q  262 tttctatttacctgatgactgttgggaatgtgtcttcaaattcct 306  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  41886292 tttctatttacctgatgagtgttgggaatgtgtcttcaaattcct 41886336  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 359 - 414
Target Start/End: Original strand, 28660967 - 28661022
Alignment:
Q  359 ttgtctcgaagcagttcctctctatcaccaaccttctctgattctctctcactata 414  Q
    ||||||||||||||||||||||||||||||||  ||||  |||||| |||||||||    
T  28660967 ttgtctcgaagcagttcctctctatcaccaacggtctcaaattctcgctcactata 28661022  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 41900191 - 41900233
Alignment:
Q  266 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 308  Q
    |||||||| ||||| ||||||||||||||||||||||||||||    
T  41900191 tatttaccagatgagtgttgggaatgtgtcttcaaattcctca 41900233  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 32268918 - 32268880
Alignment:
Q  266 tatttacctgatgactgttgggaatgtgtcttcaaattc 304  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  32268918 tatttaccagatgagtgttgggaatgtgtcttcaaattc 32268880  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 45244521 - 45244568
Alignment:
Q  261 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 308  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  45244521 atttctatttacctgatgagtgttgggaatgtgtcttgaaattcctca 45244568  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 304
Target Start/End: Complemental strand, 566792 - 566754
Alignment:
Q  266 tatttacctgatgactgttgggaatgtgtcttcaaattc 304  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  566792 tatttacctgatgactgttgggaacgtgtcttcaaattc 566754  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 361 - 413
Target Start/End: Complemental strand, 6007711 - 6007659
Alignment:
Q  361 gtctcgaagcagttcctctctatcaccaaccttctctgattctctctcactat 413  Q
    |||||||| ||||||||||| |||||||||  |||| ||||||||||||||||    
T  6007711 gtctcgaaacagttcctctccatcaccaacagtctccgattctctctcactat 6007659  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 269 - 304
Target Start/End: Original strand, 1524000 - 1524035
Alignment:
Q  269 ttacctgatgactgttgggaatgtgtcttcaaattc 304  Q
    |||||||||||||||||||||| |||||||||||||    
T  1524000 ttacctgatgactgttgggaatctgtcttcaaattc 1524035  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Original strand, 1537246 - 1537293
Alignment:
Q  261 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 308  Q
    |||| |||||||||||||| |||||||||||||| |||| ||||||||    
T  1537246 atttatatttacctgatgagtgttgggaatgtgtattcagattcctca 1537293  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 1488824 - 1488866
Alignment:
Q  266 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 308  Q
    |||||||||||||| || |||||||||||| ||||||||||||    
T  1488824 tatttacctgatgagtgctgggaatgtgtcgtcaaattcctca 1488866  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 307
Target Start/End: Original strand, 12120920 - 12120961
Alignment:
Q  266 tatttacctgatgactgttgggaatgtgtcttcaaattcctc 307  Q
    |||||||||||||| ||||||||||||||| ||| |||||||    
T  12120920 tatttacctgatgagtgttgggaatgtgtcatcagattcctc 12120961  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 554133 - 554097
Alignment:
Q  272 cctgatgactgttgggaatgtgtcttcaaattcctca 308  Q
    |||||||| |||||||||| |||||||||||||||||    
T  554133 cctgatgaatgttgggaatttgtcttcaaattcctca 554097  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 645501 - 645445
Alignment:
Q  252 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 308  Q
    |||| ||| |||| ||||||||| |||| ||||||| ||||||||||| ||||||||    
T  645501 cagctgcagatttttatttaccttatgattgttgggtatgtgtcttcagattcctca 645445  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 353 - 409
Target Start/End: Original strand, 1547461 - 1547517
Alignment:
Q  353 tatccgttgtctcgaagcagttcctctctatcaccaaccttctctgattctctctca 409  Q
    ||||| ||||||| || || |||||||| |||||||||| |||| ||||||||||||    
T  1547461 tatcccttgtctccaaacaattcctctccatcaccaaccgtctccgattctctctca 1547517  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 252 - 308
Target Start/End: Complemental strand, 9582087 - 9582031
Alignment:
Q  252 cagcagcatatttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 308  Q
    ||||| || |||| ||||||||| |||||||||||||||  ||||||||||||||||    
T  9582087 cagcaacagatttttatttacctaatgactgttgggaatccgtcttcaaattcctca 9582031  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 261 - 308
Target Start/End: Complemental strand, 9412497 - 9412450
Alignment:
Q  261 atttctatttacctgatgactgttgggaatgtgtcttcaaattcctca 308  Q
    |||| |||||||||||||| ||||||||| || |||||||||||||||    
T  9412497 atttttatttacctgatgaatgttgggaaagtatcttcaaattcctca 9412450  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 361 - 414
Target Start/End: Complemental strand, 28935619 - 28935566
Alignment:
Q  361 gtctcgaagcagttcctctctatcaccaaccttctctgattctctctcactata 414  Q
    |||||||| |||||||||||||||||||||  |||| ||||| | |||||||||    
T  28935619 gtctcgaaacagttcctctctatcaccaacagtctccgattcacactcactata 28935566  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 6403975 - 6403935
Alignment:
Q  267 atttacctgatgactgttgggaatgtgtcttcaaattcctc 307  Q
    |||| ||||||||||| |||||||| |||||||||||||||    
T  6403975 atttgcctgatgactgatgggaatgcgtcttcaaattcctc 6403935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 6433212 - 6433172
Alignment:
Q  267 atttacctgatgactgttgggaatgtgtcttcaaattcctc 307  Q
    |||||||||||||||||||||||||  |||||| |||||||    
T  6433212 atttacctgatgactgttgggaatgcatcttcagattcctc 6433172  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 266 - 308
Target Start/End: Original strand, 17642614 - 17642656
Alignment:
Q  266 tatttacctgatgactgttgggaatgtgtcttcaaattcctca 308  Q
    |||||||||||||| |||||||| | |||||||||||||||||    
T  17642614 tatttacctgatgagtgttgggagtctgtcttcaaattcctca 17642656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Complemental strand, 10616246 - 10616209
Alignment:
Q  266 tatttacctgatgactgttgggaatgtgtcttcaaatt 303  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  10616246 tatttacctgatgagtgttgggaatgtatcttcaaatt 10616209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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