View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_high_19 (Length: 493)
Name: NF21513_high_19
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_high_19 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 21 - 217
Target Start/End: Complemental strand, 10239379 - 10239180
Alignment:
| Q |
21 |
atcggagccaacaccaacagatgaaagcaaatgagttgcaaatttctaattatgatgat---tcatttggcctaatattgaaaattatcatagaaaaatc |
117 |
Q |
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| T |
10239379 |
atcggagccaacaccaacagatgaaggcaaatgagttgcaaatttctaaatatgatgatgattcatttggcctaatattgaaaattatcatagaaaaatc |
10239280 |
T |
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| Q |
118 |
aatttaagcataaaatgtgacaatgcatgtgggttacaagcaagctcttattaattaatatggtataaaacaaattcataatataacttgtgtcaacttg |
217 |
Q |
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| T |
10239279 |
aattttagcataaaatgtgacaatgcatgtgggttacaagcaagctcttattaattaatatggtataaaacaaattcataatataacttgtgtcaacttg |
10239180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 257 - 395
Target Start/End: Complemental strand, 10239140 - 10239002
Alignment:
| Q |
257 |
gtctatctcctctcctatgtccaatataaaacaaaatttgatatttttaaattatgtatccttatggtaggttaactacattttttggtggtgtggttac |
356 |
Q |
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| T |
10239140 |
gtctatctcctctcctatgtccaatataaaacaaaatttgatatttttaaattatgtatccttatggtaggttaactacattttttggtgatgtggttac |
10239041 |
T |
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| Q |
357 |
aaatatgatccatattcgagacagcaatatagcaaatgg |
395 |
Q |
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| T |
10239040 |
aaatatgatccatattcgagacagcaatatagcaaatgg |
10239002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 419 - 489
Target Start/End: Complemental strand, 10238981 - 10238911
Alignment:
| Q |
419 |
ttgaggggagcaaatggtttattattcctaacccaatatttaattcacccaatctgtcatattcttcgaca |
489 |
Q |
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| T |
10238981 |
ttgaggggagcaaatggtttattattcctaacccaatatttaattcacccaatctgtcattttcttggaca |
10238911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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