View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_high_2 (Length: 721)
Name: NF21513_high_2
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_high_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 517 - 721
Target Start/End: Complemental strand, 3144501 - 3144297
Alignment:
| Q |
517 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgttagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
616 |
Q |
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| T |
3144501 |
cgtgttaaggtaatgaaggaaatgaatgcagttaataatgtaagttggtgaatgaagtcagaaataatagagaaagtgaagaagagagagtaatggtcgc |
3144402 |
T |
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| Q |
617 |
cgccttatttgcttaaaaccaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc |
716 |
Q |
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| T |
3144401 |
cgccttatttgcttaaaactaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagagaggtctgtactctgtggtctc |
3144302 |
T |
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| Q |
717 |
tgctg |
721 |
Q |
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| T |
3144301 |
tgctg |
3144297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 3144963 - 3144802
Alignment:
| Q |
18 |
gtatcattatcagtttgttagaatcaaggtgaaccaccccgtagcttctgcaaaatcacggttgttcaccgtgattcaagtgataccaaacatgcataga |
117 |
Q |
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| T |
3144963 |
gtatcattatcagtttgttagaatcaaggtgaaccaccccgtagcttctgcaaaatcacggttgttcaccgtgatttaagtgataccaaacatgcataga |
3144864 |
T |
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| Q |
118 |
agaatcaagcggttactagcagtgactcatcaaacaccaaaactatttcggtttatattcag |
179 |
Q |
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| T |
3144863 |
agaatcaagcggttactagcagtgactcatcaaacaccaaaactatttcggtttatattcag |
3144802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 322 - 467
Target Start/End: Complemental strand, 3144694 - 3144550
Alignment:
| Q |
322 |
taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttcannnnnnnnnnnnnnnnnncttgaaaaccaaacaaa |
421 |
Q |
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| T |
3144694 |
taacctgacaaacttgccatcagattgaagtgcatcaggctttgaacccaacttcataaacttca-tttttgtttctttttttcttgaaaaccaaacaaa |
3144596 |
T |
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| Q |
422 |
gaaagtagggtcacgtatgttgagaagtaagacagtgaaagaaagc |
467 |
Q |
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| T |
3144595 |
gaaagtaggatcacgtatgttgagaagtaagacagtgaaagaaagc |
3144550 |
T |
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