View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_high_27 (Length: 377)
Name: NF21513_high_27
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_high_27 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 359
Target Start/End: Original strand, 30104016 - 30104371
Alignment:
| Q |
1 |
atctctttaaacactgaaaacaattgaagtgtaactcatttcttgtcttcactagaaacttaatcatggaacttcacaaccacattcttcactttacagt |
100 |
Q |
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| T |
30104016 |
atctctttaaacactgaaaacaattgaagtgtaactcatttcttgtcttctctagaaacttaatcatggaactttacaactacattcttcacttcacagt |
30104115 |
T |
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| Q |
101 |
tctgttcctatgtatgttttctcagttattcaactgccaacaagtttacctcaatggcactgtctttgactgcactaacaccacctcttctgtaccaaaa |
200 |
Q |
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| T |
30104116 |
tctgttcctatgcatgttttctcagttattcaactgccagcaagtatacctcaataacactgtctttgactgcactaacccc---tctactgtaccaaaa |
30104212 |
T |
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| Q |
201 |
ggatacctctgcaatggccttaaaaagtcatgtacttcctttttagttttcaagtcaaaacctctctatgataaccctacaaaaattgcctaccttcttc |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30104213 |
ggatacctctgcaatggccttaaaaaatcatgtacttcctttttagttttcaagtcaaaacctctctatgataaccctacaaaaattgcctaccttcttc |
30104312 |
T |
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| Q |
301 |
gctctgaagcatcagccatagcctcaatcaataagatccctttaaatgaaaagattcct |
359 |
Q |
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| T |
30104313 |
gctctgaagcatcagccatagcctcaatcaataagatccctttaaatgaaaagattcct |
30104371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 194 - 331
Target Start/End: Original strand, 30114418 - 30114555
Alignment:
| Q |
194 |
accaaaaggatacctctgcaatggccttaaaaagtcatgtacttcctttttagttttcaagtcaaaacctctctatgataaccctacaaaaattgcctac |
293 |
Q |
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||||||||||||||| |||||| | | | |||| ||||| | ||| || ||| ||||| |||||||||| ||||| |||||||||| ||||| ||| |
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| T |
30114418 |
accaaaaggatacctatgcaatagtcctcaaaactcatgcaattcattcttaactttcaggtcaaaaccttcttatgacaaccctacaagtattgcttac |
30114517 |
T |
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| Q |
294 |
cttcttcgctctgaagcatcagccatagcctcaatcaa |
331 |
Q |
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|||||| |||| |||||||| |||||||||||||||| |
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| T |
30114518 |
cttcttggctcagaagcatcgaccatagcctcaatcaa |
30114555 |
T |
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