View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21513_high_30 (Length: 346)

Name: NF21513_high_30
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21513_high_30
NF21513_high_30
[»] chr6 (6 HSPs)
chr6 (18-331)||(11121193-11121506)
chr6 (198-298)||(1122202-1122302)
chr6 (195-284)||(18898897-18898986)
chr6 (242-284)||(19430326-19430368)
chr6 (242-284)||(22514533-22514575)
chr6 (204-277)||(22460488-22460561)
[»] chr7 (7 HSPs)
chr7 (27-320)||(21292092-21292397)
chr7 (195-309)||(21949747-21949860)
chr7 (195-284)||(9174884-9174973)
chr7 (195-284)||(6617022-6617111)
chr7 (195-284)||(46809031-46809120)
chr7 (195-284)||(34638492-34638581)
chr7 (195-284)||(42053618-42053707)
[»] chr4 (15 HSPs)
chr4 (21-309)||(29688924-29689222)
chr4 (21-191)||(37011223-37011392)
chr4 (21-157)||(29689319-29689453)
chr4 (195-309)||(36316211-36316324)
chr4 (195-309)||(36330420-36330533)
chr4 (195-276)||(27020261-27020342)
chr4 (195-284)||(34806279-34806368)
chr4 (195-284)||(39295911-39296000)
chr4 (204-330)||(33287453-33287579)
chr4 (195-284)||(5948179-5948268)
chr4 (210-278)||(53095208-53095276)
chr4 (204-291)||(37011111-37011198)
chr4 (223-298)||(1206544-1206618)
chr4 (211-280)||(34446702-34446771)
chr4 (210-289)||(32107443-32107525)
[»] chr8 (12 HSPs)
chr8 (26-196)||(3730247-3730416)
chr8 (195-292)||(18464711-18464808)
chr8 (195-316)||(31441761-31441882)
chr8 (195-284)||(12498713-12498802)
chr8 (195-284)||(18381357-18381446)
chr8 (195-284)||(39617899-39617988)
chr8 (25-129)||(11756441-11756541)
chr8 (222-277)||(22935494-22935548)
chr8 (195-284)||(6420900-6420989)
chr8 (222-307)||(11958635-11958720)
chr8 (232-283)||(15988073-15988124)
chr8 (233-298)||(3730449-3730513)
[»] chr2 (8 HSPs)
chr2 (195-278)||(4647944-4648027)
chr2 (25-146)||(12111633-12111754)
chr2 (195-296)||(19622557-19622658)
chr2 (222-284)||(30960858-30960919)
chr2 (223-320)||(9893872-9893967)
chr2 (222-284)||(7647590-7647651)
chr2 (213-283)||(17419091-17419161)
chr2 (195-284)||(40267805-40267894)
[»] chr5 (8 HSPs)
chr5 (195-284)||(40835033-40835122)
chr5 (195-278)||(1594553-1594636)
chr5 (195-309)||(39004850-39004963)
chr5 (195-284)||(5808339-5808428)
chr5 (195-284)||(16484938-16485027)
chr5 (195-284)||(39560908-39560997)
chr5 (231-284)||(641016-641069)
chr5 (195-284)||(16482489-16482578)
[»] chr3 (13 HSPs)
chr3 (195-284)||(3335962-3336051)
chr3 (210-283)||(25899153-25899226)
chr3 (195-284)||(33951682-33951771)
chr3 (204-284)||(47330053-47330133)
chr3 (195-284)||(22402398-22402487)
chr3 (195-284)||(37969168-37969257)
chr3 (207-284)||(4062400-4062477)
chr3 (187-284)||(4545679-4545776)
chr3 (195-284)||(28414066-28414155)
chr3 (223-298)||(46028310-46028384)
chr3 (210-272)||(23687689-23687750)
chr3 (210-272)||(24059926-24059987)
chr3 (223-301)||(587298-587374)
[»] chr1 (14 HSPs)
chr1 (195-284)||(2843948-2844037)
chr1 (195-284)||(38981055-38981144)
chr1 (237-330)||(36085755-36085848)
chr1 (195-284)||(2027818-2027907)
chr1 (195-284)||(18414527-18414616)
chr1 (195-284)||(28641572-28641661)
chr1 (195-284)||(32519751-32519840)
chr1 (195-284)||(45541457-45541546)
chr1 (195-284)||(49008163-49008252)
chr1 (223-298)||(32829231-32829305)
chr1 (195-284)||(8110684-8110773)
chr1 (204-284)||(24779852-24779932)
chr1 (223-298)||(5965116-5965190)
chr1 (223-295)||(15853336-15853407)
[»] scaffold0009 (1 HSPs)
scaffold0009 (195-284)||(194654-194743)
[»] scaffold0256 (1 HSPs)
scaffold0256 (195-284)||(4038-4127)


Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 11121193 - 11121506
Alignment:
Q  18 agtattcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaa 117  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||    
T  11121193 agtattcagattgataggctagaaacggtcatacaaacttgttgtcttgtgtctcaatgagtggttcgcgggtgtattcgctaccgcgttggcggtcaaa 11121292  T
Q  118 ttcattgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccagaatttgctattgatcatcgcagt 217  Q
    |||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11121293 ttcattgccattggtaaaaggttggagttcataattgtgcctaagttgtgcttgcatgatggcttgttgtgggccagaatttgctattgatcatcgcagt 11121392  T
Q  218 aaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcct 317  Q
    ||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11121393 aaacggttggtgcgtgtggattcgttaattaccgtgttggcggtcgaatccactccccactttcaagcatctgtctgtggttatgtatcccagtcatcct 11121492  T
Q  318 gttcactgacatga 331  Q
    ||||||| ||||||    
T  11121493 gttcactaacatga 11121506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 198 - 298
Target Start/End: Original strand, 1122202 - 1122302
Alignment:
Q  198 ttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtgg 297  Q
    |||||| ||||||| | | ||||| |||| ||| |||||||||  ||||||||||||||||||| |||||||||||||||| ||||| |||| | |||||    
T  1122202 ttgctagtgatcatagtattaaaccgttgttgcgtgtggattcgctaattaccgtgttggcggtcgaatccactccccactctcaagaatctatttgtgg 1122301  T
Q  298 t 298  Q
    |    
T  1122302 t 1122302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 18898897 - 18898986
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18898897 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18898986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 19430368 - 19430326
Alignment:
Q  242 ttaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  19430368 ttaattaccgtgttggcggttgaatctactccccactctcaag 19430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 22514575 - 22514533
Alignment:
Q  242 ttaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||||||||||||||||||||||| |||||||||| |||||    
T  22514575 ttaattaccgtgttggcggttgaatctactccccactctcaag 22514533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 277
Target Start/End: Complemental strand, 22460561 - 22460488
Alignment:
Q  204 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccac 277  Q
    ||||| |||||| |||| ||||||||  ||| |||||  || |||||||||||||||||||||| |||||||||    
T  22460561 ttgatgatcgcattaaatggttggtgtgtgttgattcgctatttaccgtgttggcggttgaatctactccccac 22460488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 27 - 320
Target Start/End: Original strand, 21292092 - 21292397
Alignment:
Q  27 attgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattgcc 126  Q
    |||||| ||| | |||| ||| |||||||||| |||||| ||||||| ||||||||||||||||| | ||||| ||||||| | ||||  ||||||| ||    
T  21292092 attgatgggccaaaaatagtcgtacaaacttgatgtcttctgtctcagtgagtggttggtgggtggactcgctgccgtgttcgtggtcggattcatttcc 21292191  T
Q  127 attggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccag------------aatttgctattgatcatcgc 214  Q
    ||||||||||| |||||||||| |||| ||||||| ||||||||| ||||| ||||| ||||||| ||            |||||| | |||||||||||    
T  21292192 attggtaaaaggttggagttcagacttatgcctagtttgtgcttgtatgatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatcgc 21292291  T
Q  215 agtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcat 314  Q
    |||||||||||||||| |||  |||| ||||||||||||||||||||  | |||||||||||||| ||||||||||| ||||||||||||||| | ||||    
T  21292292 agtaaacggttggtgcgtgttaattcgttaattaccgtgttggcggtcaagtccactccccacttgcaagcatctgtttgtggttatgtatccaagtcat 21292391  T
Q  315 cctgtt 320  Q
    ||||||    
T  21292392 cctgtt 21292397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 21949747 - 21949860
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 294  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||| ||||||||| |||||||||| ||||| || ||| ||    
T  21949747 aatttgatgttgatcatagcagtaaacagttcgtgcgtgtggattttttaattaccgtgttggtggttgaatctactccccactctcaagaatatgtatg 21949846  T
Q  295 tggttatgtatccca 309  Q
    | ||| |||||||||    
T  21949847 t-gttttgtatccca 21949860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 9174884 - 9174973
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  ||||||||| |||||||||||||||| |||||||||| |||||    
T  9174884 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccatgttggcggttgaatcaactccccactctcaag 9174973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 6617111 - 6617022
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  6617111 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 6617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 46809120 - 46809031
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  46809120 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 46809031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 34638492 - 34638581
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  34638492 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 34638581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 42053707 - 42053618
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  42053707 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 42053618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 309
Target Start/End: Complemental strand, 29689222 - 29688924
Alignment:
Q  21 attcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattc 120  Q
    ||||| |||||||| ||| |||||  | |||||||||||||||| |||| ||| |||||||||||| |||| || |||||||||||||||| ||   |||    
T  29689222 attcaaattgatagactaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtggttggtaggtggatccgctaccgtgttggcgatcgg-ttc 29689124  T
Q  121 attgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccagaa------------tttgctattgat 208  Q
    |||||||||||| || ||| |||| ||| |||||||||||||||||||| | ||||   | ||||||||||  |||            |||| | || ||    
T  29689123 attgccattggtgaaggtt-ggagctcagacttgtgcctaggttgtgctagtatgaccacatgttgtgggctggaaatgactgattaatttgttgttaat 29689025  T
Q  209 catcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatccc 308  Q
    |||||||||||||| |||||||  ||||||||  ||||||||||||||||||| ||| ||||||||||||||||||||| |||| |||||||||||||||    
T  29689024 catcgcagtaaacgattggtgcgcgtggattcgctaattaccgtgttggcggtcgaacccactccccactttcaagcatttgtccgtggttatgtatccc 29688925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 37011392 - 37011223
Alignment:
Q  21 attcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattc 120  Q
    ||||||||||||||||||||||||||| |||||||||| ||| | |||||| | ||||||||||||| ||| |||||||| |||||||||||||  ||||    
T  37011392 attcagattgataggctagaaatggtcgtacaaacttgatgtatggtgtcttagtgagtggttggtgagtggattcgctatcgtgttggcggtcggattc 37011293  T
Q  121 attgccattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggc 191  Q
    |||||||||||| |||| ||||| || | ||||||||||| ||||||||||  |||| |||| ||||||||    
T  37011292 attgccattggt-aaaggttggattttagacttgtgcctatgttgtgcttgtgtgatcgctttttgtgggc 37011223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 157
Target Start/End: Complemental strand, 29689453 - 29689319
Alignment:
Q  21 attcagattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattc 120  Q
    ||||| |||||||| ||| |||||  | |||||||||||||||| |||| ||| |||||||||||| |||| ||||||||||||||||||||||   |||    
T  29689453 attcaaattgatagactaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtggttggtaggtggattcgctaccgtgttggcggtc-ggttc 29689355  T
Q  121 attgccattggtaaaagtttggagttcatacttgtgc 157  Q
    ||||||||||||  ||| |||||| ||| ||||||||    
T  29689354 attgccattggt-gaaggttggagctcagacttgtgc 29689319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 36316211 - 36316324
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 294  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| |||||||||| ||||| || ||| ||    
T  36316211 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccccactctcaagaatatgtatg 36316310  T
Q  295 tggttatgtatccca 309  Q
    | ||| |||||||||    
T  36316311 t-gttttgtatccca 36316324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 195 - 309
Target Start/End: Original strand, 36330420 - 36330533
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 294  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| |||||||||| ||||| || ||| ||    
T  36330420 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccccactctcaagaatatgtatg 36330519  T
Q  295 tggttatgtatccca 309  Q
    | ||| |||||||||    
T  36330520 t-gttttgtatccca 36330533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 276
Target Start/End: Original strand, 27020261 - 27020342
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactcccca 276  Q
    |||||| | |||||||| ||||||||| ||| ||||||||| |||  |||||||||||||||||||||||||| ||||||||    
T  27020261 aatttgatgttgatcatagcagtaaacagttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactcccca 27020342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 34806368 - 34806279
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  ||||||||||||||||||||||||||  ||||||||| |||||    
T  34806368 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctgctccccactctcaag 34806279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 39296000 - 39295911
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  ||||||||||||||||| |||||||| |||||||||| |||||    
T  39296000 aatttgatgttgatcatagcagtaaacagttagtgtgtgtggatttgttaattaccgtgttggctgttgaatctactccccactctcaag 39295911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 330
Target Start/End: Original strand, 33287453 - 33287579
Alignment:
Q  204 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgt 303  Q
    ||||||| ||||||||||   ||||||| |||||||  ||| ||||||||||||||||  |||||| |||||| |||||||||| |||  || |||||      
T  33287453 ttgatcaccgcagtaaacaagtggtgcacgtggatttgttatttaccgtgttggcggtcaaatccagtccccaatttcaagcatttgtgcgtcgttatta 33287552  T
Q  304 atcccaatcatcctgttcactgacatg 330  Q
    ||| || |||||||||| | |||||||    
T  33287553 atctcagtcatcctgttgattgacatg 33287579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 5948268 - 5948179
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  5948268 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 5948179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 278
Target Start/End: Original strand, 53095208 - 53095276
Alignment:
Q  210 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 278  Q
    ||||||||||| ||||||||||||| ||||| | | |||||||||||| ||||| |||||||| |||||    
T  53095208 atcgcagtaaatggttggtgcatgtagattcgtcatttaccgtgttggtggttggatccactctccact 53095276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 204 - 291
Target Start/End: Complemental strand, 37011198 - 37011111
Alignment:
Q  204 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgt 291  Q
    |||||||||| ||||||| ||||||||| |||||||   ||||||  |||||  ||||  ||| ||||||||||||||||||||||||    
T  37011198 ttgatcatcgtagtaaacagttggtgcaggtggatttgctaattattgtgttaacggtcaaattcactccccactttcaagcatctgt 37011111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 1206544 - 1206618
Alignment:
Q  223 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 298  Q
    ||||||||| ||| |||| |||||||||||||||||||| |||| ||| ||||| |||||| ||| |||| |||||    
T  1206544 gttggtgcacgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaaacatttgtccgtggt 1206618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 280
Target Start/End: Complemental strand, 34446771 - 34446702
Alignment:
Q  211 tcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccacttt 280  Q
    ||||||||||| |||||||   |||||||| ||| |||||||||||||||| | ||||||| ||| ||||    
T  34446771 tcgcagtaaacagttggtgatcgtggattctttagttaccgtgttggcggtcggatccacttcccgcttt 34446702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 289
Target Start/End: Original strand, 32107443 - 32107525
Alignment:
Q  210 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcg---gttgaatccactccccactttcaagcatct 289  Q
    |||||| |||| |||||||||  |||||||  ||| ||||||||||||||    ||| |||||||||||||||||||| ||||    
T  32107443 atcgcaataaatggttggtgcgagtggatttgttatttaccgtgttggcgattattggatccactccccactttcaagaatct 32107525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 26 - 196
Target Start/End: Original strand, 3730247 - 3730416
Alignment:
Q  26 gattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattgc 125  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||  ||||| ||||||||| ||||||  |||||||||    
T  3730247 gattgatatgctagaaattgtcgtacaaacttgttgtcttgtgtctcagttagtggttggtgggtagattcgataccgtgtttgcggtcggattcattgc 3730346  T
Q  126 cattggtaaaagtttggagttcatacttgtgcctaggttgtgcttgcatgatggcttgttgtgggccagaa 196  Q
    ||||||| |||| ||| |||||  ||||| |||||||| ||||||| ||||| ||||||||| ||||||||    
T  3730347 cattggt-aaaggttgtagttcggacttgagcctaggtagtgcttgtatgatcgcttgttgttggccagaa 3730416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 18464711 - 18464808
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtc 292  Q
    |||||||  |||||||||||||||||| | ||||||  |||||||| ||| ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  18464711 aatttgccgttgatcatcgcagtaaacaggtggtgcgcgtggattcgttatttaccgtgtcggcggtcgaatccactccccactttcaagcatctgtc 18464808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 316
Target Start/End: Complemental strand, 31441882 - 31441761
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 294  Q
    |||||||| ||||| ||||||||||||| | ||||| ||||||||  ||||| || ||||||||||||||||||||||||||||  |||| |||||||||    
T  31441882 aatttgctgttgatgatcgcagtaaacgataggtgcgtgtggatttgttaatgactgtgttggcggttgaatccactccccactagcaagaatctgtctg 31441783  T
Q  295 tggttatgtatcccaatcatcc 316  Q
    |||||  |||||| | ||||||    
T  31441782 tggtttcgtatcctagtcatcc 31441761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 12498713 - 12498802
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  12498713 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactcctcactctcaag 12498802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 18381357 - 18381446
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18381357 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18381446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 39617899 - 39617988
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  39617899 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 39617988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 11756541 - 11756441
Alignment:
Q  25 agattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattg 124  Q
    ||||| ||||||||||||||| | || ||||||||||| ||    |||| |||||||||||| |||| || |||||||||||||||||||| | | ||||    
T  11756541 agattaataggctagaaatggccgtataaacttgttgtttt----ctcagtgagtggttggttggtggatccgctaccgtgttggcggtcagactgattg 11756446  T
Q  125 ccatt 129  Q
    |||||    
T  11756445 ccatt 11756441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 22935494 - 22935548
Alignment:
Q  222 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccac 277  Q
    |||||||| |||||||||| |||| ||||||||||||||| |||||||||||||||    
T  22935494 ggttggtg-atgtggattcgttaactaccgtgttggcggtcgaatccactccccac 22935548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 6420989 - 6420900
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| |||  ||||| |||||    
T  6420989 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctactttccactctcaag 6420900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 11958635 - 11958720
Alignment:
Q  222 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcc 307  Q
    ||||||||| ||||||||||||| ||||| || | ||||| | ||||||||| |||| ||||| || ||| ||||||| |||||||    
T  11958635 ggttggtgcgtgtggattcattagttaccatggtagcggtcggatccactccacactctcaagaatttgtttgtggttttgtatcc 11958720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 283
Target Start/End: Complemental strand, 15988124 - 15988073
Alignment:
Q  232 tgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 283  Q
    |||||||||  ||||||||||||||||||| |||| ||||||||||| ||||    
T  15988124 tgtggattctctaattaccgtgttggcggtcgaattcactccccactctcaa 15988073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 298
Target Start/End: Original strand, 3730449 - 3730513
Alignment:
Q  233 gtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 298  Q
    |||||||| ||| ||||| |||||||| |  ||||||||||||||||||||| || ||||||||||    
T  3730449 gtggattcgtta-ttaccatgttggcgttcaaatccactccccactttcaagaatttgtctgtggt 3730513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 4647944 - 4648027
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 278  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||||| ||||||||||    
T  4647944 aatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccccact 4648027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 146
Target Start/End: Complemental strand, 12111754 - 12111633
Alignment:
Q  25 agattgataggctagaaatggtcatacaaacttgttgtcttgtgtctcaatgagtggttggtgggtgtattcgctaccgtgttggcggtcaaattcattg 124  Q
    ||||||||||||||||||||| | |  ||||||| ||| ||||||||||  ||||| ||||| |||| ||||||||| |||||||| |||| ||| |||     
T  12111754 agattgataggctagaaatggccgtttaaacttgatgttttgtgtctcagcgagtgattggttggtggattcgctacggtgttggcagtcagatttatta 12111655  T
Q  125 ccattggtaaaagtttggagtt 146  Q
    ||||| ||||||| ||||||||    
T  12111654 ccatttgtaaaaggttggagtt 12111633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 296
Target Start/End: Complemental strand, 19622658 - 19622557
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 294  Q
    |||||||||| ||||||||||| ||  ||||||||  ||||||||| |||||||||||||||| |||  ||||||||||||||| ||||| |||||| ||    
T  19622658 aatttgctatagatcatcgcagcaactggttggtgtgtgtggattcgttaattaccgtgttggtggtcaaatccactccccactctcaagaatctgtttg 19622559  T
Q  295 tg 296  Q
    ||    
T  19622558 tg 19622557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 222 - 284
Target Start/End: Complemental strand, 30960919 - 30960858
Alignment:
Q  222 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||||| |||||||||| |||||||||||||||||||| |||||| ||||||||| |||||    
T  30960919 ggttggtg-atgtggattcgttaattaccgtgttggcggtcgaatccgctccccactctcaag 30960858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 9893872 - 9893967
Alignment:
Q  223 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgtt 320  Q
    ||||||||  ||| |||| ||||||| ||||| |||| | |||||||| |||||||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  9893872 gttggtgcgcgtgaattcgttaattatcgtgt-ggcgatcgaatccac-ccccactttcaaacatttgtctgtggttatctatcccagtcatcctgtt 9893967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 284
Target Start/End: Original strand, 7647590 - 7647651
Alignment:
Q  222 ggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||||| |||||||||| |||| ||||||||||||||| |||| ||||||||||| |||||    
T  7647590 ggttggtg-atgtggattcgttaactaccgtgttggcggtcgaatgcactccccactctcaag 7647651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 283
Target Start/End: Complemental strand, 17419161 - 17419091
Alignment:
Q  213 gcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 283  Q
    ||||||||  |||||||| |||||||||  ||||||||||||||||||| |||| ||||| ||||| ||||    
T  17419161 gcagtaaattgttggtgcgtgtggattcgctaattaccgtgttggcggtcgaattcactcgccactctcaa 17419091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 40267894 - 40267805
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| |||||||||  || |||| |||| |||  ||||||||||||||||||||| |||| ||||| |||| |||||    
T  40267894 aatttgatgttgatcatagcagtaaacaattagtgcgtgtgaatttgttaattaccgtgttggcggtttaatctactcctcactctcaag 40267805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 40835122 - 40835033
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  40835122 aatttgatgttgatcatagcagtaaactgttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 40835033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 195 - 278
Target Start/End: Original strand, 1594553 - 1594636
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccact 278  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| ||||    
T  1594553 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacact 1594636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 39004963 - 39004850
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctg 294  Q
    |||||| | |||||||| || |||||| ||| |||| ||||||||  ||||||||||||||| |||||||||| |||||||||| ||||| || ||| ||    
T  39004963 aatttgatgttgatcatagctgtaaacagttagtgcgtgtggatttgttaattaccgtgttgacggttgaatctactccccactctcaagaatatgtatg 39004864  T
Q  295 tggttatgtatccca 309  Q
    | ||| |||||||||    
T  39004863 t-gttttgtatccca 39004850  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 5808339 - 5808428
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  5808339 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 5808428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 16485027 - 16484938
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  16485027 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 16484938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 39560908 - 39560997
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| | ||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  39560908 aatttgatgttgatcatagcagtaaactgttagtgcgtatggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 39560997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 231 - 284
Target Start/End: Original strand, 641016 - 641069
Alignment:
Q  231 atgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||||||| |||| ||||||||||||||| |||||||||||||||| |||||    
T  641016 atgtggattcgttaactaccgtgttggcggtcgaatccactccccactctcaag 641069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 16482578 - 16482489
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| ||   |||||||||||||||||||||||||| ||| |||||| |||||    
T  16482578 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccactctcaag 16482489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 3335962 - 3336051
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  3335962 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 3336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 25899153 - 25899226
Alignment:
Q  210 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaa 283  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||| ||||    
T  25899153 atcgcactaaacggttggtgcatgtggtttcattaattaccgtgttggcggtcgaatctactctccactctcaa 25899226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 33951682 - 33951771
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  33951682 aatttgatgttgatcatagcagtaaacagttagtgcgtgtggattttttaattaccgtgttggcggttgaatctactccccactctcaag 33951771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 204 - 284
Target Start/End: Original strand, 47330053 - 47330133
Alignment:
Q  204 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| |||||||||| |||||    
T  47330053 ttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccactctcaag 47330133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 22402487 - 22402398
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  22402487 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 22402398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 37969257 - 37969168
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  37969257 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 37969168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 284
Target Start/End: Original strand, 4062400 - 4062477
Alignment:
Q  207 atcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    ||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  4062400 atcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 4062477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 284
Target Start/End: Original strand, 4545679 - 4545776
Alignment:
Q  187 tgggccagaatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||||||| | ||| ||||||||||||||||| |||||||   ||| |||||  || ||||| |||||||||| ||||||| |||||||| |||||    
T  4545679 tgggccagaaatggctgttgatcatcgcagtaaatggttggtatgtgttgattcgctatttaccatgttggcggtcgaatccaatccccactctcaag 4545776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 28414066 - 28414155
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||| ||||||||||||||||| ||||| |||| |||||    
T  28414066 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattactgtgttggcggttgaatctactccacactctcaag 28414155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 46028310 - 46028384
Alignment:
Q  223 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 298  Q
    |||||||| |||| |||| |||||||| ||||||||||| |||||||| ||| | |||||||||| ||||||||||    
T  46028310 gttggtgcttgtgaattcgttaattacagtgttggcggtcgaatccac-ccctattttcaagcatttgtctgtggt 46028384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 23687750 - 23687689
Alignment:
Q  210 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactc 272  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||||| |||| ||||||||||    
T  23687750 atcgcagtaaatggttggtgcatgt-gattcatcaattactgtgttgccggtcgaatccactc 23687689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 272
Target Start/End: Complemental strand, 24059987 - 24059926
Alignment:
Q  210 atcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactc 272  Q
    ||||||||||| ||||||||||||| ||||||| |||||| |||||| |||| ||||||||||    
T  24059987 atcgcagtaaatggttggtgcatgt-gattcatcaattactgtgttgccggtcgaatccactc 24059926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 587374 - 587298
Alignment:
Q  223 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttat 301  Q
    ||||||||| ||||||||| |||||||||||||||| || |||| ||  ||||| ||||||||||  ||| ||||||||    
T  587374 gttggtgcacgtggattcactaattaccgtgttggccgtcgaattca--ccccattttcaagcattagtccgtggttat 587298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 2844037 - 2843948
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| ||||||||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  2844037 aatttgatgttgatcatagcagtaaactgttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactccccactctcaag 2843948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 38981055 - 38981144
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||||||||||||  ||||||| |||||||||||||||||| |||||||||| |||||    
T  38981055 aatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaacgtgttggcggttgaatctactccccactctcaag 38981144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 237 - 330
Target Start/End: Complemental strand, 36085848 - 36085755
Alignment:
Q  237 attcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggttatgtatcccaatcatcctgttcactgacatg 330  Q
    |||| ||| ||||||| ||| |||| |||| |||||| ||||||||||||||||||||||||||| ||||||| ||||| |||| | |||||||    
T  36085848 attcgttatttaccgtattgacggtcgaattcactccacactttcaagcatctgtctgtggttatctatcccagtcatcttgttgattgacatg 36085755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 2027907 - 2027818
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| | ||||||| ||| |||| ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  2027907 aatttgatgttgatcatagtagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 2027818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 18414616 - 18414527
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  18414616 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 18414527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 28641572 - 28641661
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||| ||||||||| |||||||||| |||||    
T  28641572 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccactctcaag 28641661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 32519751 - 32519840
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  32519751 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 32519840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 45541546 - 45541457
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||  ||||||||  |||||||||||||||||||||||||| ||||| |||| |||||    
T  45541546 aatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacactctcaag 45541457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 49008252 - 49008163
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| ||||||||  ||||||||||| |||||||||||||| ||||| |||| |||||    
T  49008252 aatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtattggcggttgaatctactccacactctcaag 49008163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 32829231 - 32829305
Alignment:
Q  223 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 298  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||||||| ||||| |||||||||| ||||||||||    
T  32829231 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccccattttcaagcatttgtctgtggt 32829305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 195 - 284
Target Start/End: Complemental strand, 8110773 - 8110684
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||   || |||| |||| |||  |||||||||||||||||||||||||| |||||||||| |||||    
T  8110773 aatttgatgttgatcatagcagtaaatatttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactccccactctcaag 8110684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 204 - 284
Target Start/End: Complemental strand, 24779932 - 24779852
Alignment:
Q  204 ttgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||||| | ||||||| ||| |||| | ||||||  |||||||||||||| ||||||||||| |||||||||| |||||    
T  24779932 ttgatcatagaagtaaacagttagtgcgtctggatttgttaattaccgtgttagcggttgaatctactccccactctcaag 24779852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 298
Target Start/End: Original strand, 5965116 - 5965190
Alignment:
Q  223 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgtggt 298  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||| ||| ||||| |||||||||| ||||||||||    
T  5965116 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaagcatttgtctgtggt 5965190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 295
Target Start/End: Complemental strand, 15853407 - 15853336
Alignment:
Q  223 gttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaagcatctgtctgt 295  Q
    ||||||||  ||| |||| |||||||||||||||||||| |||||||| ||| | |||||||||| |||||||    
T  15853407 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccctattttcaagcatttgtctgt 15853336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 194654 - 194743
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| ||||||||| ||| |||| |||| |||  |||||||||||||||||||||||||| ||| |||||| |||||    
T  194654 aatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccactctcaag 194743  T

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Target: scaffold0256 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 284
Target Start/End: Original strand, 4038 - 4127
Alignment:
Q  195 aatttgctattgatcatcgcagtaaacggttggtgcatgtggattcattaattaccgtgttggcggttgaatccactccccactttcaag 284  Q
    |||||| | |||||||| | | ||||| ||| |||| |||| |||  ||||||||||||||||||||||||||  ||| ||||| |||||    
T  4038 aatttgatgttgatcatagaaataaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatcttctctccactctcaag 4127  T

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