View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_high_31 (Length: 345)
Name: NF21513_high_31
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 336
Target Start/End: Complemental strand, 3940656 - 3940339
Alignment:
| Q |
19 |
acgaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttattaatgt |
118 |
Q |
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| T |
3940656 |
acgaagtgcttcctaaaggagcatctgatcactgtcctatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttattaatga |
3940557 |
T |
|
| Q |
119 |
tttgactgaccatcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgaccaatatatggttcaagttgaaagcc |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3940556 |
tttgactgaccatcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgactaatatatggttcaagttgaaagcc |
3940457 |
T |
|
| Q |
219 |
ttgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgctagaactactttagttgatgtccaacagcagc |
318 |
Q |
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| T |
3940456 |
ttgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaaaagttgaagatgctagaactgctttagttgacgtccaaaggcagc |
3940357 |
T |
|
| Q |
319 |
ttagtactgatcctatga |
336 |
Q |
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||||| | ||||| |||| |
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| T |
3940356 |
ttagttcagatccgatga |
3940339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 336
Target Start/End: Complemental strand, 33633887 - 33633588
Alignment:
| Q |
20 |
cgaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttattaatgtt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33633887 |
cgaagtgcttcctaaaggagtatctgatcactgtcctatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttattaatgtt |
33633788 |
T |
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| Q |
120 |
ttgactgaccatcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgaccaatatatggttcaagttgaaagcct |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
33633787 |
ttgactgaccatcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatac-----------------tatggttcaagttgaaagcct |
33633705 |
T |
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| Q |
220 |
tgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgctagaactactttagttgatgtccaacagcagct |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
33633704 |
tgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgtcaaaaaagttgaagatgttagaactactttagttgatgtccaaaagcagct |
33633605 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 336
Target Start/End: Complemental strand, 35168922 - 35168606
Alignment:
| Q |
21 |
gaagtgcttcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttattaatgttt |
120 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |
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| T |
35168922 |
gaagttcttcctaaaggagtatctgatcactgtcctatatgtatggatatgtcttgtcctgcttctccaaagaatactcctttcctatttattaatgtat |
35168823 |
T |
|
| Q |
121 |
tgactgaccatcatcttttt-cctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgaccaatatatggttcaagttgaaagcct |
219 |
Q |
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|||||||||||||||||||| ||| | |||||||| ||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35168822 |
tgactgaccatcatcttttttccttcgttgatacaggagaaatagggtcagaatttgcatactaatctcttgactaatatatggttcaagttgaaagcct |
35168723 |
T |
|
| Q |
220 |
tgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgctagaactactttagttgatgtccaacagcagct |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
35168722 |
tgaaaaaagatctaaaagagttaaattctacacattttcaaggtactaccaaaaaagttgaagatgctagaactgctttagttgatgtccaaaggcagct |
35168623 |
T |
|
| Q |
320 |
tagtactgatcctatga |
336 |
Q |
| |
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|||| | ||||| |||| |
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| T |
35168622 |
tagttcagatccgatga |
35168606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 189 - 336
Target Start/End: Complemental strand, 30282752 - 30282605
Alignment:
| Q |
189 |
ttgaccaatatatggttcaagttgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgcta |
288 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
30282752 |
ttgactaatatatggttcaagttgaaagccttgaaaaaagatctaaaagagttaaattctacacattttcaaggtaataccaaaaaagttgaagatgcta |
30282653 |
T |
|
| Q |
289 |
gaactactttagttgatgtccaacagcagcttagtactgatcctatga |
336 |
Q |
| |
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||||| |||||||||| |||||| |||||||||| | ||||| |||| |
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| T |
30282652 |
gaactgctttagttgacgtccaaaggcagcttagttcagatccgatga |
30282605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 40951075 - 40951337
Alignment:
| Q |
29 |
tcctaaaggagtatctgatcactgtccaatatctatggatatgtcttgtcctgcttctcctaagaatactccttttagatttattaatgttttgactgac |
128 |
Q |
| |
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|||||||||||||||||||||||||| ||| ||||| | ||| |||| |||| ||| ||||| || || |||||| |||||||||||||||| |
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| T |
40951075 |
tcctaaaggagtatctgatcactgtcatataagcttggatcttgcttatccttcttccactagaaataccccattcagatttcttaatgttttgactgaa |
40951174 |
T |
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| Q |
129 |
catcatctttttcctgccttgatacaagagaaatggggtccgaatttgcatactaatctcttgaccaatatatggttcaagttgaaagccttgaaaaaag |
228 |
Q |
| |
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||||| | ||||| |||||||||||| |||||||||| ||| | || |||||| || | |||||||||||||||||||| || ||||| |||| |
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| T |
40951175 |
catcacatgtttccaagcttgatacaagaaaaatggggtcataatctacactctaatcagttaataaatatatggttcaagttgaaggctttgaagaaag |
40951274 |
T |
|
| Q |
229 |
atctaaaagagttaaattctacacattttcaaggtattgccaaaagagttgaagatgctagaa |
291 |
Q |
| |
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| | |||||||||||| ||| | |||||||||||| |||||| | |||||||||| |||| |
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| T |
40951275 |
agttgaaagagttaaatactaagtactttcaaggtattaccaaaaaaattgaagatgcgagaa |
40951337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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