View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21513_high_7 (Length: 584)
Name: NF21513_high_7
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_high_7 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 17 - 569
Target Start/End: Complemental strand, 28288440 - 28287888
Alignment:
| Q |
17 |
cagaaattcctacagtaacccattcaggtaggacctttatcaagtcaatttgatatgaaatactagttttttcttgaggatcataggtgttttgatattt |
116 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28288440 |
cagaaattcctatagtaacccattcaggtaggacctttattaagtcaatttcatatgaaatactagttttttcttgaggatcataggtgttttgatattt |
28288341 |
T |
|
| Q |
117 |
ccaagatacattcaaatttttggttgtagaattgtagttaatccatacctcagtagtttctccactatgtaaacttgcattccaaggtgttgacaccgat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28288340 |
ccaagatacattcaaatttttggttgtagaattatagttaatccatacctcagtagtttctccactatgtaaacttgcgttccaaggtgttgacaccgat |
28288241 |
T |
|
| Q |
217 |
gaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccagggacgatttgcgtaagaatcaaactccacatgaagaaggttactagttg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28288240 |
gaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccagggacgatttgcgtaagaatcaaactccacatgaagaaggttactggttg |
28288141 |
T |
|
| Q |
317 |
aattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaaggcaattccatggcc |
416 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
28288140 |
aattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaatgcaattccatggcc |
28288041 |
T |
|
| Q |
417 |
atatctagaattattttgagtgtcaataataaaggtgtaatgggttgtgaagtcagtgagttgacctatctttgagtcccatagtaaaactttcttggaa |
516 |
Q |
| |
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|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
28288040 |
atatctagaactattttgagtgtcgataataaaggtgtaatgggttgtgaagtcagtgagttgacctatttttgagtcccatagtaaaactttcttggaa |
28287941 |
T |
|
| Q |
517 |
aatatgactcttccaacttgactagtataatatgcatcattgatgttgaaatc |
569 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28287940 |
aatatgactcttccaacttgactagtataatatgcatcattgatgttgaaatc |
28287888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 28278586 - 28278114
Alignment:
| Q |
17 |
cagaaattcctacagtaacccattcaggtaggacctttatcaagtcaatttgatatgaaatactagttttttcttgaggatcataggtgttttgatattt |
116 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||| | ||| ||||||||| |
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|
| T |
28278586 |
cagaaaatccaacagttacccattcaggtaggaccttcatcaaatcaatttgatatgaaagattagttttttcttgaggactaggggtagtttgatattc |
28278487 |
T |
|
| Q |
117 |
ccaagatacattcaaatttttggttgtagaattgtagttaatccatacctcagtagtttctccactatgtaaacttgcattccaaggtgttgacaccgat |
216 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||||||||||||| | ||| |
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|
| T |
28278486 |
ccaagatacagtcaaattcttggttttagaattgtagctaatccatacctcagcattgtctccactatgtaaacttgcattccaaggtgttgatattgat |
28278387 |
T |
|
| Q |
217 |
gaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccagggacgatttgcgtaagaatcaaactccacatgaagaa---ggttacta- |
312 |
Q |
| |
|
|| |||||||||| |||||||||||||||||||| |||||||| | | || ||||||| ||||||||||||| ||||||| || |||||||| |
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| T |
28278386 |
gatttgattgaattattgttgattcccacatgctctgttgtctcgctaaattcactatttgcgaaagaatcaaactcaacatgaacaattcggttactag |
28278287 |
T |
|
| Q |
313 |
--gttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaaggcaattcc |
410 |
Q |
| |
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| |||| |||||| |||||||||||||| || | ||| ||||||||||||| ||||| ||||||| ||| | ||||| | |||||| |||||||| |
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|
| T |
28278286 |
atgatgaaaccattgttgtggtgttaaataggcccatcaagccaccagcagaattgggtggaatttcaattcccaccggaacaaggaaaaacgcaattcc |
28278187 |
T |
|
| Q |
411 |
atggccatatctagaattattttgagtgtcaataataaaggtgtaatgggttgtgaagtcagtgagttgacct |
483 |
Q |
| |
|
||| |||||| ||| | ||||||||||||||| ||||| |||||||| ||| | ||||||| |||||||||| |
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|
| T |
28278186 |
atgaccatatgtagtacgattttgagtgtcaatgataaaagtgtaatgagttttaaagtcagcgagttgacct |
28278114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 31 - 516
Target Start/End: Original strand, 28305324 - 28305818
Alignment:
| Q |
31 |
gtaacccattcaggtaggacctttatcaagtcaatttgatatgaaatactagttttttcttgaggatcataggtgttttgatatttccaagatacattca |
130 |
Q |
| |
|
|||||||||||||||| || || | || |||||||||||||||| | ||||||||||||||||| | |||| ||||||||| |||||||||| ||| |
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|
| T |
28305324 |
gtaacccattcaggtaaaactttcttgaaatcaatttgatatgaaagattagttttttcttgaggactagaggtcgtttgatattcccaagatacagtca |
28305423 |
T |
|
| Q |
131 |
aatttttggttgtagaattgtagttaatccatacctcagtagtttctccactatgtaaacttgcattccaaggtgttgacaccgatgaaatgattgaatt |
230 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| | ||||| |||||||||| |
|
|
| T |
28305424 |
aattcttggttgtagaattgtacctaatccatacctcagcagtgtctccactatgtaaacttgcattccaaggtgttgatattgatgatttgattgaatt |
28305523 |
T |
|
| Q |
231 |
gttgttgattcccacatgctccgttgtctcaccccagggacgatttgcgtaagaatcaaactccacatgaagaa---ggttactagttgaattcattgtc |
327 |
Q |
| |
|
|||||||||||||||||||| |||||||| | | || ||||||| ||||||||||||||||||||| || ||||||||| |||| |||||| |
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| T |
28305524 |
attgttgattcccacatgctctgttgtctcgctaaattcactatttgcgaaagaatcaaactccacatgaacaatatggttactagatgaaagcattgtt |
28305623 |
T |
|
| Q |
328 |
gtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaaggcaattccatggccatatctagaat |
427 |
Q |
| |
|
|||||||| ||||| || | ||| |||||| || || |||||||||||||||||| ||| | | ||||||||||||| ||||||||||| ||| |
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|
| T |
28305624 |
gtggtgttgaatagtcccatcaagccaccagaggagtttggtgggatttcaaatccataagcagctaagaaaaaggcaaggccatggccatagaatgaag |
28305723 |
T |
|
| Q |
428 |
------tattttgagtgtcaataataaaggtgtaatgggttgtgaagtcagtgagttgacctatctttgagtcccatagtaaaactttcttggaa |
516 |
Q |
| |
|
|| | |||||| || ||||| ||||| || |||||||||||||||||||||||| | ||||||||||| ||||| || || |||||| |
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|
| T |
28305724 |
gtgatctacctcgagtgttgatgataaaagtgtagtgagttgtgaagtcagtgagttgacctgtttttgagtcccaaagtaacacctttttggaa |
28305818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 17 - 537
Target Start/End: Original strand, 28265292 - 28265815
Alignment:
| Q |
17 |
cagaaattcctacagtaacccattcaggtaggacctttatcaagtcaatttgatatgaaatactagttttttcttgaggatcataggtgttttgatattt |
116 |
Q |
| |
|
|||||| ||||| |||||||||||||| | ||||| || || ||||||| |||||||| ||||||||||||| |||| | || |||| ||||| |
|
|
| T |
28265292 |
cagaaaatcctatggtaacccattcaggcaaaaccttcattaaatcaatttcatatgaaaggctagttttttcttctggatttgaagttctttggtattt |
28265391 |
T |
|
| Q |
117 |
ccaagatacattcaaatttttggttgtagaattgtagttaatccatacctcagtagtttctccactatgtaaacttgcattccaaggtgttgacaccgat |
216 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||| | ||||||||||||||| | | |||||||| |||| ||| |||||||||||||| |||| ||| |
|
|
| T |
28265392 |
ccaagatactgttaaattcttggttgtagaattgaaactaatccatacctcagcaatgtctccactgtgtagactagcattccaaggtgtaaacacagat |
28265491 |
T |
|
| Q |
217 |
gaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccagggacgatttgcgtaagaatcaaactccacatgaagaa---ggttactag |
313 |
Q |
| |
|
|| ||||||||||| |||||||||||||||||| |||||||||||||| || ||| | ||||||||||||||||| ||| || ||||||||| |
|
|
| T |
28265492 |
gacatgattgaattaacgttgattcccacatgctcggttgtctcaccccattcaccattgggaaaagaatcaaactccacaagaacaatttggttactag |
28265591 |
T |
|
| Q |
314 |
ttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaaggcaattccatg |
413 |
Q |
| |
|
|||| ||| || || |||||||||| || | ||| ||| ||| ||||| ||||| || ||||||||||||||| |||| ||||| |||| |||||| |
|
|
| T |
28265592 |
atgaaaccatggttgtcatgttaaataggcccataaaagcagtagctgaatttggtggaatatcaaatccaaaaggagccaaaaaaaatgcaagtccatg |
28265691 |
T |
|
| Q |
414 |
gccatatctagaattattttgagtgtcaataataaaggtgtaatgggttgtgaagtcagtgagttgacctatctttgagtcccatagtaaaactttcttg |
513 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||| |||||||||||| |||| ||||||| ||||||| | ||||| ||||| ||||| || || || |
|
|
| T |
28265692 |
accatgcctagaattattttgagtgtcaatgataaaagtgtaatgggttttgaaatcagtgacttgacctgtttttgaatcccaaagtaacacctttctg |
28265791 |
T |
|
| Q |
514 |
gaaaatatgactcttccaacttga |
537 |
Q |
| |
|
||| | ||| | |||||||||||| |
|
|
| T |
28265792 |
gaatacatggcccttccaacttga |
28265815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 17 - 538
Target Start/End: Original strand, 28295108 - 28295638
Alignment:
| Q |
17 |
cagaaattcctacagtaacccattcaggtaggacctttatcaagtcaatttgatatgaaatactagttttttcttgaggatcataggtgttttgatattt |
116 |
Q |
| |
|
|||||| ||||||||||| ||||||||| | || || || || |||||| | ||||| |||||| ||||||||||||| |||| |||| ||||| |
|
|
| T |
28295108 |
cagaaaatcctacagtaatccattcaggcataactttcattaaatcaattgaaattgaaagactagtattttcttgaggatttgaggtagtttggtattt |
28295207 |
T |
|
| Q |
117 |
ccaagatacattcaaatttttggttgtagaattgtagttaatccatacctcagtagtttctccactatgtaaacttgcattccaaggtgttgacaccgat |
216 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||| ||||||||||||||| ||| |||||||||||| || |||||||||||||| | | ||| |
|
|
| T |
28295208 |
ccaagatacggtcaaattcttggttgtagaattgtacctaatccatacctcagcagtgtctccactatgtttgctggcattccaaggtgtcgtagctgat |
28295307 |
T |
|
| Q |
217 |
gaaatgattgaattgttgttgattcccacatgctccgttgtctcaccccagggacgatttgcgtaagaatcaaactccacatgaagaa---ggttactag |
313 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | ||| ||| | | |||||||||| |||||||||| || ||||||| || ||||||||| |
|
|
| T |
28295308 |
gaaatgattgaattaatgttgattcccacatgacctcttgcctcgcgaaattcacgatttgcgaaagaatcaaattctacatgaacaatttggttactag |
28295407 |
T |
|
| Q |
314 |
ttgaattcattgtcgtggtgttaaatagaccaaaaaaggcaccagcagaattaggtgggatttcaaatccaaaaggaaccaagaaaaaggcaattccatg |
413 |
Q |
| |
|
|||| |||||| ||||||||||||||||| | |||| ||||| ||||||| | ||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
28295408 |
atgaaaccattgttgtggtgttaaatagacccataaagccaccatcagaattgagggggatttcaaatccataaggaaccaagaaaaaggcaagaccatg |
28295507 |
T |
|
| Q |
414 |
gccatatctagaa------ttattttgagtgtcaataataaaggtgtaatgggttgtgaagtcagtgagttgacctatctttgagtcccatagtaaaact |
507 |
Q |
| |
|
||||||| ||| || |||||||| || | ||| |||||||| ||||||||||||||||||| ||| | ||||| ||||| ||||| ||| |
|
|
| T |
28295508 |
gccatataatgaaggtgatctaccttgagtgttgatgacaaaagtgtaatgagttgtgaagtcagtgagttttcctgtgtttgaatcccaaagtaacact |
28295607 |
T |
|
| Q |
508 |
ttcttggaaaatatgactcttccaacttgac |
538 |
Q |
| |
|
|| | ||| | | ||||||||||||||||| |
|
|
| T |
28295608 |
ttttctgaatagaagactcttccaacttgac |
28295638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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