View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21513_low_10 (Length: 559)

Name: NF21513_low_10
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21513_low_10
NF21513_low_10
[»] chr1 (9 HSPs)
chr1 (244-545)||(24436039-24436340)
chr1 (1-248)||(24435796-24436043)
chr1 (244-538)||(23995142-23995430)
chr1 (445-535)||(23922752-23922842)
chr1 (445-515)||(25803204-25803274)
chr1 (438-530)||(23915096-23915188)
chr1 (445-520)||(23989837-23989912)
chr1 (146-202)||(25802770-25802826)
chr1 (445-492)||(5253011-5253058)
[»] chr4 (2 HSPs)
chr4 (246-540)||(13435763-13436051)
chr4 (104-239)||(13436152-13436281)
[»] chr5 (5 HSPs)
chr5 (251-520)||(35074628-35074891)
chr5 (409-480)||(35079749-35079823)
chr5 (105-191)||(35079404-35079490)
chr5 (248-334)||(35079594-35079680)
chr5 (123-191)||(35074435-35074503)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 244 - 545
Target Start/End: Original strand, 24436039 - 24436340
Alignment:
Q  244 cttcatttctttgacttgatgttgggcttttgttgcattatgtattgccacaatccttaaaaataatcttgaaaaagttagataatctttggcagaagta 343  Q
    ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24436039 cttcatttctttgacttgatgttgggcttttgttgcattctctattgccacaatccttaaaaataatcttgaaaaagttagataatctttggcagaagta 24436138  T
Q  344 atttgtgggtagggttctaaaagtttcaggcaaggttgttcatagtgggggtcttgtttaatagtttctttacatacacttttatacaaattagggcttg 443  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  24436139 atttgtgggtagggttctaaaagtttcaggcaaggttgttcatagtgggggtcttgtttattagtttctttacatacacttttatacaagttagggcttg 24436238  T
Q  444 atgttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaaggtgtcattctttcttttgttaatgatgagga 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24436239 atgttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaaggtgtcattctttcttttgttaatgatgatga 24436338  T
Q  544 tg 545  Q
    ||    
T  24436339 tg 24436340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 24436043 - 24435796
Alignment:
Q  1 tgaagcaaaactatccttcttctcaaaccatcaaaggatgcgccctaaattatgataaagtggttgatgagttacaaattgcgttggatgactattcgga 100  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  24436043 tgaagaaaaagtatccttcttctcaaaccatcaaaggatgtgccctaaattatgataaagtggttgatgagttacaaattgcgttggatgagtattcgga 24435944  T
Q  101 aactataagcttggatgttgcatatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttccctttctaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24435943 aactataagcttggatgttgcatatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttccctttctaca 24435844  T
Q  201 ctcaacagtgagatgaggtttattattgctattatatcgtttgcttca 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24435843 ctcaacagtgagatgaggtttattattgctattatatcgtttgcttca 24435796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 244 - 538
Target Start/End: Complemental strand, 23995430 - 23995142
Alignment:
Q  244 cttcatttctttgacttgatgttgggcttttgttgcattatgtattgccacaatccttaaaaataatcttgaaaaagttagataatctttggcagaagta 343  Q
    |||||||||||||||||||||||| ||||||  |||||| | ||||||||||||| ||| | ||||||| ||||| || |||||||||| ||  ||||||    
T  23995430 cttcatttctttgacttgatgttgagcttttcctgcattctttattgccacaatctttagatataatctggaaaatgtaagataatcttcggtcgaagta 23995331  T
Q  344 atttgtgggtagggttctaaaagtttcaggcaaggttgttcatagtgggggtcttgtttaatagtttctttacatacacttttatacaaattagggcttg 443  Q
    ||||| ||||||| ||||||   ||||| |||  |||||||| |       ||||  |    || ||| |||||||||||||  ||||| ||||||||||    
T  23995330 atttgagggtaggcttctaatgttttcaagcagcgttgttcaaa------atctttgtggcgagattccttacatacactttggtacaacttagggcttg 23995237  T
Q  444 atgttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaaggtgtcattctttcttttgttaatgat 538  Q
    || |||  | |||||| ||||||| ||| |||| ||| |||||||| || || |||| ||||| |||||||||||||||||||||||||| ||||    
T  23995236 attttgcaggaatggcatgagaaaaaaaaatcactgaaatggtgagaaacaaagataaatatgatgaaggtgtcattctttcttttgttagtgat 23995142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 535
Target Start/End: Original strand, 23922752 - 23922842
Alignment:
Q  445 tgttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaaggtgtcattctttcttttgttaat 535  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||||||| | ||||| ||| | ||||| || |||| | ||||||||||||    
T  23922752 tgttggtgaaatggcatgagaaacaaagatcattgaaatggtgagcaaaatggataaataggctgaagatgccattttctcttttgttaat 23922842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 445 - 515
Target Start/End: Original strand, 25803204 - 25803274
Alignment:
Q  445 tgttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaaggtg 515  Q
    |||||||||||| || ||||||||||| |||||||| ||||||||||| || |||| ||||||||||||||    
T  25803204 tgttggtgaaatagcatgagaaataaacatcattgaaatggtgagcaaaaatgataaatatgttgaaggtg 25803274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 438 - 530
Target Start/End: Original strand, 23915096 - 23915188
Alignment:
Q  438 ggcttgatgttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaaggtgtcattctttcttttg 530  Q
    |||||| |||||||||| |||| || ||||||||||||||||| ||||||||||| | ||||| ||| ||||||| || |||| | |||||||    
T  23915096 ggcttggtgttggtgaattggcatgggaaataaagatcattgaaatggtgagcaaaatggataaataggttgaagatgccattttctcttttg 23915188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 445 - 520
Target Start/End: Complemental strand, 23989912 - 23989837
Alignment:
Q  445 tgttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaaggtgtcatt 520  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||| || ||||||| ||||| |||| | ||||||    
T  23989912 tgttggtgaaatggcatgagaaataaagttcattgagatggtgagtaacaaggataaatatgatgaaagagtcatt 23989837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 146 - 202
Target Start/End: Complemental strand, 25802826 - 25802770
Alignment:
Q  146 gtgcgaacatagcttagttaatgaaaagattgttaatacttcttccctttctacact 202  Q
    |||||||| |||||||| |||||||||||||||||||| ||||||| || |||||||    
T  25802826 gtgcgaacgtagcttagctaatgaaaagattgttaatatttcttccattgctacact 25802770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 492
Target Start/End: Complemental strand, 5253058 - 5253011
Alignment:
Q  445 tgttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaa 492  Q
    ||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  5253058 tgttggtgaaatggcatgagaaatagagatcattgaaatggtgagcaa 5253011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 246 - 540
Target Start/End: Complemental strand, 13436051 - 13435763
Alignment:
Q  246 tcatttctttgacttgatgttgggcttttgttgcattatgtattgccacaatccttaaaaataatcttgaaaaagttagataatctttggcagaagtaat 345  Q
    ||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||| |||| ||||||||    
T  13436051 tcatttctttgactttatgttggacttttgttgcattatctattgccacaatccttaaaaataatcttgaaaaggtaagataatctatggctgaagtaat 13435952  T
Q  346 ttgtgggtagggttctaaaagtttcaggcaaggttgttcatagtgggggtcttgtttaatagtttctttacatacacttttatacaaattagggcttgat 445  Q
    ||||||||||| |||||||||||||| |||||||||||||||| |      ||  |||  | ||||||||||||||||||| ||||||||||||||||||    
T  13435951 ttgtgggtaggtttctaaaagtttcaagcaaggttgttcataggg------ttccttaccaatttctttacatacacttttgtacaaattagggcttgat 13435858  T
Q  446 gttggtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaaggtgtcattctttcttttgttaatgatga 540  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| ||| || |||| ||||||||||||    
T  13435857 gttcgtgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggataaatttgtggaaggtgccatcctctcttatgttaatgatga 13435763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 13436152 - 13436281
Alignment:
Q  104 tataagcttggatgttgcatatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttccctttctacactc 203  Q
    ||||||||||||||||| |||||||  ||||||||||||| ||||      |||||||||||||||||||||| |||||| ||||||| |||||||| |     
T  13436152 tataagcttggatgttgtatatgcttttgatgcacttgaaaagtg------tagcttagttaatgaaaagatttttaatatttcttccatttctacaatg 13436245  T
Q  204 aacagtgagatgaggtttattattgctattatatcg 239  Q
    || |||||||||    ||||| ||||||||||||||    
T  13436246 aatagtgagatggaacttattcttgctattatatcg 13436281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 251 - 520
Target Start/End: Original strand, 35074628 - 35074891
Alignment:
Q  251 tctttgacttgatgttgggcttttgttgcattatgtattgccacaatccttaaaaataatcttgaaaaagttagataatctttggcagaagtaatttgtg 350  Q
    ||||| ||||| ||||||| ||||  ||| || | ||||||||||||| |||||||| | ||  |||||||||||||||||| |    |||||||||| |    
T  35074628 tctttaacttgttgttgggattttactgccttctctattgccacaatctttaaaaatgacctgcaaaaagttagataatcttcgatcaaagtaatttgag 35074727  T
Q  351 ggtagggttctaaaagtttcaggcaaggttgttcatagtgggggtcttgtttaatagtttctttacatacacttttatacaaattagggcttgatgttgg 450  Q
    |||| | ||||| |||||| || ||| |||||||| |||      ||| || |  || |||||| |||| || ||  ||||| |||||||||| ||||||    
T  35074728 ggtaagcttctataagtttgagacaacgttgttcaaagt------ctttttgaccagattctttgcatatacgttcgtacaacttagggcttggtgttgg 35074821  T
Q  451 tgaaatggcgtgagaaataaagatcattgatatggtgagcaataaggatagatatgttgaaggtgtcatt 520  Q
    ||||| ||| ||| |||||||||||||||| ||  |||  || |||||||  ||||||||||||| ||||    
T  35074822 tgaaagggcatgacaaataaagatcattgaaataatgataaaaaaggataagtatgttgaaggtgccatt 35074891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 409 - 480
Target Start/End: Original strand, 35079749 - 35079823
Alignment:
Q  409 ttctttacatacacttttatacaaattagggcttgatgttg---gtgaaatggcgtgagaaataaagatcattga 480  Q
    |||||||||||||||||| ||||| || ||||||| |||||   |||||||||| || |||||||||||||||||    
T  35079749 ttctttacatacacttttgtacaacttggggcttggtgttggtagtgaaatggcatgggaaataaagatcattga 35079823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 191
Target Start/End: Complemental strand, 35079490 - 35079404
Alignment:
Q  105 ataagcttggatgttgcatatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttcc 191  Q
    |||||||||| |||   ||||||||| |||||||||||   ||| |||| |||||| | ||| ||||||||||||||||||||||||    
T  35079490 ataagcttggctgtcaaatatgctagcgatgcacttgacatgtgtgaacgtagcttggctaacgaaaagattgttaatacttcttcc 35079404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 334
Target Start/End: Original strand, 35079594 - 35079680
Alignment:
Q  248 atttctttgacttgatgttgggcttttgttgcattatgtattgccacaatccttaaaaataatcttgaaaaagttagataatctttg 334  Q
    |||||||||||| ||||||||| |||| |||| || | |||||||||| || |||||||  | ||  |||| |||||||||||||||    
T  35079594 atttctttgactcgatgttgggattttattgccttctttattgccacagtctttaaaaaggacctgcaaaaggttagataatctttg 35079680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 35074503 - 35074435
Alignment:
Q  123 tatgctagtgatgcacttgaagagtgcgaacatagcttagttaatgaaaagattgttaatacttcttcc 191  Q
    |||||||| |||||||||||   ||| |||| |||||| | | ||||||||||||| ||||||||||||    
T  35074503 tatgctagcgatgcacttgacatgtgtgaacgtagcttggctgatgaaaagattgtcaatacttcttcc 35074435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University