View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_12 (Length: 540)
Name: NF21513_low_12
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 111 - 486
Target Start/End: Original strand, 28536474 - 28536849
Alignment:
| Q |
111 |
ttcaaaaccaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgaggttgagcgtgcgaagaaagcaagaaggaagaacgaca |
210 |
Q |
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| T |
28536474 |
ttcaaaaccaaaaaccagactcgagagtatgataatgtgtggttgatagatgaaacggctgacgttgagcgtgcgaagaacgcaagaaggaagaacgaca |
28536573 |
T |
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| Q |
211 |
caaaaagtttgtagatgtcatatagtactttcattctcctcaacacaatgaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaa |
310 |
Q |
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| T |
28536574 |
caaaaagtttgtagatgtcatatagtactttcattctcctcaacacaataaaacatattcaagcttgtcaaataaaaatttccactgaattaaccaggaa |
28536673 |
T |
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| Q |
311 |
acattacgtgtttcgaaactcgatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattc |
410 |
Q |
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| T |
28536674 |
acattacgtgtttcgaaactggatccactctactatgtataattagtaattaccatgaaagatataaggttggccgctttgaaattccatatgaatattc |
28536773 |
T |
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| Q |
411 |
aaaccaaattcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
486 |
Q |
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| T |
28536774 |
aaaccaaattcctgtatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcat |
28536849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 420 - 528
Target Start/End: Original strand, 28536833 - 28536941
Alignment:
| Q |
420 |
tcctatatatttgtcattgatgaaaaaataaaagctgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
519 |
Q |
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| T |
28536833 |
tcctgtatattaatcattgatgaaaaaataaaaggtgaaaacagaatgactcctgtatattaatcatggagttaaaccaaagggttattgatgaaattat |
28536932 |
T |
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| Q |
520 |
cacaggttc |
528 |
Q |
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| T |
28536933 |
cacaggttc |
28536941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 40 - 118
Target Start/End: Complemental strand, 28536317 - 28536239
Alignment:
| Q |
40 |
tatcctcgtgttaaattacaattgagagaatgcattcccccacattttgcacctatgtggctgctttaatcttcaaaac |
118 |
Q |
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| T |
28536317 |
tatcctcgtgttaaattacaattgagagaatccattcccccacattttgcacctatgtggctgctttaatcttcaaaac |
28536239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28536419 - 28536380
Alignment:
| Q |
1 |
acatgagaaggtaaagtgtcatctttcaccattcatgaat |
40 |
Q |
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| T |
28536419 |
acatgagaaggtaaagtgtcatctttcaccattcatgaat |
28536380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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