View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21513_low_15 (Length: 507)
Name: NF21513_low_15
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 60 - 359
Target Start/End: Original strand, 31780666 - 31780965
Alignment:
| Q |
60 |
tctccatttttaattttccccaattaataaaaattcacgccgtgtctcatggcgcagtaatctcaccaatcaatgacataccggacccactcagcctcgg |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31780666 |
tctccatttttaattttccccaattaataaaaattcacgccgtgtctcatggcgcagtaatctcaccaatcaatgacataccggacccactcagcctcgg |
31780765 |
T |
|
| Q |
160 |
ataccaaaaccaaccaatcaaacacagccacgtcacaccacctgggatcctgtcagataccccacaccgtgtgtacccaaaattttagcgggaaaatttc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31780766 |
ataccaaaaccaaccaatcaaacacagccacgtcacaccacctgggatcctgtcagataccccacaccgtgtgtacccaaaattttagcgggaaaatttc |
31780865 |
T |
|
| Q |
260 |
gcaaataagcaaaattcaaataaactgnnnnnnnntaaaacccctaataacccctttcactattttccctctcactttctctctccgatttagggtttca |
359 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31780866 |
gcaaataagcaaaattcaaataaactgaaaaaaaataaaaaccctaataacccctttcactattttccctctcactttctctctccgatttagggtttca |
31780965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University