View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21513_low_16 (Length: 503)
Name: NF21513_low_16
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_16 |
 | |
|
| [»] chr8 (17 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold0065 (4 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 6 - 503
Target Start/End: Original strand, 2711014 - 2711511
Alignment:
| Q |
6 |
agcaacacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg |
105 |
Q |
| |
|
|||| |||| ||||||||||||||||||| ||||||||||||| ||||||| ||||||| ||| || | | ||||||||||||| ||||||| |||||| |
|
|
| T |
2711014 |
agcaccacacatcaaataagtcctcaattcatcccacttttcataactctcgttccaaatgtcatccaagactaacaagtatctcgtaccagtcaaattg |
2711113 |
T |
|
| Q |
106 |
gcttgaatcatattttgtaattcttctaatgtcttgtttacaacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagc |
205 |
Q |
| |
|
||| ||| |||||| || || |||||||| |||| | | ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2711114 |
gctcgaagcatattctgcaactcttctaaattcttatctgcaatattgtctttggttaacaacgcaaccatgttcttcagaatagttttgacatcaaagt |
2711213 |
T |
|
| Q |
206 |
tatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaat |
305 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2711214 |
tatccgagacacatacccacatactcttttcaaacaaattttgcacttgatcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaat |
2711313 |
T |
|
| Q |
306 |
accaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgat |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2711314 |
accaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgat |
2711413 |
T |
|
| Q |
406 |
tctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaac |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2711414 |
tctaacacaaaagaactactttccctccttacatcattagttttcttaaccaccacaacattggagttaagattcaacacagacatatctttcacaac |
2711511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 6 - 465
Target Start/End: Complemental strand, 2989722 - 2989263
Alignment:
| Q |
6 |
agcaacacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg |
105 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
2989722 |
agcaccacacatcaaataaggcctcaattgatcccacttttcaaaacactcattccaaacgtcgtcgagaactaacaagtatctctgaccagttaaattg |
2989623 |
T |
|
| Q |
106 |
gcttgaatcatattttgtaattcttctaatgtcttgtttacaacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagc |
205 |
Q |
| |
|
|||||| |||| |||| || |||| ||||||||| ||||||||| ||||||||||| ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
2989622 |
acttgaagcatactttgcaactcttgtaatgtcttatttacaacatcatctttggttaatgacgcaaccatgttcttcagaatagttttgaaatcaaagt |
2989523 |
T |
|
| Q |
206 |
tatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaat |
305 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2989522 |
tatccgagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaat |
2989423 |
T |
|
| Q |
306 |
accaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgat |
405 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| | |||| ||| |||||||||||||| ||||| ||| |
|
|
| T |
2989422 |
accaacaatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcgtgttttgatcttcttctcttccaatgatctcagat |
2989323 |
T |
|
| Q |
406 |
tctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaaca |
465 |
Q |
| |
|
||||||||| |||| | | ||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
2989322 |
tctaacacataagagcaagtttccctccttacattgttagttttcgcaaccaccacaaca |
2989263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 177 - 503
Target Start/End: Complemental strand, 2980443 - 2980117
Alignment:
| Q |
177 |
gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga |
276 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| |||||||| |||| ||||||||||||||| |
|
|
| T |
2980443 |
gttcttcagaatagttttgacatcaaagttatcagagacacatacccacattctcttttcaaacaaattctgcacttcttcatcgttgtataccaattga |
2980344 |
T |
|
| Q |
277 |
gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt |
376 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||| || || | |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2980343 |
gcaagagccgtctttcccaaaccaccaataccaacaatagcaaccacagaaacttgttgattttcatgtgattgcctcaacaagcttataatcttgtttt |
2980244 |
T |
|
| Q |
377 |
tatcatcttctcttccaataatctctgattctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaag |
476 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||| |||||| | ||||||||||||||| |||| ||||||||||||||||||| |||||||||| |
|
|
| T |
2980243 |
tatcatcttctcttccaatgatatttgattctaacacataagaacaagtttccctccttacattgttagctttctcaaccaccacaacattggagttaag |
2980144 |
T |
|
| Q |
477 |
attcaacacagacatatctttcacaac |
503 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
2980143 |
attcaacacagacatatctttcacaac |
2980117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 178 - 500
Target Start/End: Original strand, 3170170 - 3170492
Alignment:
| Q |
178 |
ttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgag |
277 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | ||| |||| ||||||||||||||||||||||| |
|
|
| T |
3170170 |
ttcttcagaatagttttgacatcaaagttatcagagacacatacccacatcctcttttcaaaagactttgttacttgagcatcattgtataccaattgag |
3170269 |
T |
|
| Q |
278 |
caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttcttttt |
377 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3170270 |
caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttcttttt |
3170369 |
T |
|
| Q |
378 |
atcatcttctcttccaataatctctgattctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaaga |
477 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | | ||| |||||||||||||||| | ||||| ||| |
|
|
| T |
3170370 |
atcatcttctcttccaatgatctctgattctaacacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacatttgagtttaga |
3170469 |
T |
|
| Q |
478 |
ttcaacacagacatatctttcac |
500 |
Q |
| |
|
|||||| ||| |||||||||||| |
|
|
| T |
3170470 |
ttcaacccaggcatatctttcac |
3170492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 177 - 500
Target Start/End: Original strand, 3142065 - 3142388
Alignment:
| Q |
177 |
gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga |
276 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||| ||||||| || ||||||||| ||||| |||||| |||||||||||||||||||| |
|
|
| T |
3142065 |
gttcttcacaatagttttgacatcaaagttatcagagacacaaacccacatacacttttcaaaataatttgttacttcaccatcattgtataccaattga |
3142164 |
T |
|
| Q |
277 |
gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt |
376 |
Q |
| |
|
| ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||| | |||| |
|
|
| T |
3142165 |
gaaagagctgtctttcccaaaccaccaatcccaacaatagcaaccacagagacacgttgattttcatgtgattgcctcaacatgcttacaatgtcatttt |
3142264 |
T |
|
| Q |
377 |
tatcatcttctcttccaataatctctgattctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaag |
476 |
Q |
| |
|
||||||| ||||||||||| || ||||| ||||||||||||||||| |||| ||||| ||| |||||||| || ||||||||||||| | | ||| || |
|
|
| T |
3142265 |
tatcatcatctcttccaatgatatctgactctaacacaaaagaacttttttctctcctaacactattagtttgctgaaccaccacaacattcgggtttag |
3142364 |
T |
|
| Q |
477 |
attcaacacagacatatctttcac |
500 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
3142365 |
attcaacacagacatatctttcac |
3142388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 170 - 503
Target Start/End: Complemental strand, 3002543 - 3002211
Alignment:
| Q |
170 |
caaccaagttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtatac |
269 |
Q |
| |
|
|||||| |||||||| ||||||||| ||||||||| | ||||||||||||||||||| ||| |||||||| ||||||||||||| ||||||| ||||| |
|
|
| T |
3002543 |
caaccatgttcttcacaatagtttttacatcaaagttttcagagacacatacccacatacttatttcaaacaaattttgcacttctccatcattatatac |
3002444 |
T |
|
| Q |
270 |
caattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatc |
369 |
Q |
| |
|
||| |||||||||| ||||||||| ||||||||||| ||||||||||||| |||||||||||| || ||| |||||| ||| ||||| | | ||||||| |
|
|
| T |
3002443 |
caactgagcaagagttgtctttcctaaaccaccaatcccaacaatagcaatcaaggagacattttggtttccatgtggttgtctcaaaaggtgtataatc |
3002344 |
T |
|
| Q |
370 |
ttctttttatcatcttctcttccaataatctctgattctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactgg |
469 |
Q |
| |
|
| ||||||||| |||||||||||||| || || ||||||||||| ||||||||| ||||||||| ||||| | | ||| ||||||||||||||| | | |
|
|
| T |
3002343 |
tcctttttatcgtcttctcttccaatgatatccgattctaacaccaaagaactagtttccctccctacattgtaattttgttcaaccaccacaacatttg |
3002244 |
T |
|
| Q |
470 |
agttaagattcaacacagacatatctttcacaac |
503 |
Q |
| |
|
||| |||||| || ||||||||||||||||||| |
|
|
| T |
3002243 |
ggtttagattc-acccagacatatctttcacaac |
3002211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 177 - 497
Target Start/End: Original strand, 9850999 - 9851319
Alignment:
| Q |
177 |
gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga |
276 |
Q |
| |
|
|||||||| |||||||||||| |||||| | ||||||||||||||||||| |||||||||||| |||||| |||||| ||| || | || |||| |
|
|
| T |
9850999 |
gttcttcacaatagttttgacttcaaagttttcagagacacatacccacatcctcttttcaaacaaatttttcacttccatgtcacaataaatcatttga |
9851098 |
T |
|
| Q |
277 |
gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt |
376 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| ||||| ||| |||||||| ||||||||||||| ||| ||||||||||||||||||||| ||| |
|
|
| T |
9851099 |
gcaagagttgtctttcccaaaccaccaaatccaacaacagcaatcaaagagacattttgattttcatgtggttgtctcaacaagcttataatcttcattt |
9851198 |
T |
|
| Q |
377 |
tatcatcttctcttccaataatctctgattctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaag |
476 |
Q |
| |
|
||||||||||||||||||| || || ||||| ||||||||||||||| | || ||||||||| ||||||| | |||||||||||| | ||||| || |
|
|
| T |
9851199 |
tatcatcttctcttccaatgatatccgattccaacacaaaagaactagtctctctccttacacagttagtttgttgaaccaccacaacgtttgagtttag |
9851298 |
T |
|
| Q |
477 |
attcaacacagacatatcttt |
497 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
9851299 |
attcaacccagacatatcttt |
9851319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 177 - 465
Target Start/End: Original strand, 2916030 - 2916318
Alignment:
| Q |
177 |
gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga |
276 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||| ||||||||||| | ||||||||||| ||||||||||| ||||||| ||||||| |||| |
|
|
| T |
2916030 |
gttcttcaaaatagttttgacatcaaagtcttcagacacacatacccatatcttcttttcaaactttttttgcacttccccatcattatataccagttga |
2916129 |
T |
|
| Q |
277 |
gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt |
376 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| |||| |||||||||||| || ||| ||||| ||||||||| || ||| ||||| |||| |
|
|
| T |
2916130 |
gcaagagctgtcttacctaaaccgccaataccaacaatggcaatcaaggagacattgtggtttctatgtggttgcctcaataaatttacaatctcttttt |
2916229 |
T |
|
| Q |
377 |
tatcatcttctcttccaataatctctgattctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaaca |
465 |
Q |
| |
|
||| ||||||||| ||||| || ||||||||||| |||||||| | | |||| ||||||||||| | | ||| || |||||||||||| |
|
|
| T |
2916230 |
tattatcttctctaccaatgatatctgattctaatacaaaagagcaagtttctctccttacatcgtcactttgcttcaccaccacaaca |
2916318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 190 - 328
Target Start/End: Original strand, 3173747 - 3173885
Alignment:
| Q |
190 |
gttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtct |
289 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||||| || |||| || |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3173747 |
gttttgacatcaaagttatcagagacacaaacccacatcgtcatttcgaaaagattttgcacttctccatcattgtataccaattgagcaagagctgtct |
3173846 |
T |
|
| Q |
290 |
ttcccaaaccaccaataccaacaatagcaaccaaggaga |
328 |
Q |
| |
|
| |||||||||||||| ||||| || ||||||| ||||| |
|
|
| T |
3173847 |
tccccaaaccaccaattccaactattgcaaccagggaga |
3173885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 11 - 103
Target Start/End: Original strand, 9850830 - 9850922
Alignment:
| Q |
11 |
cacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaat |
103 |
Q |
| |
|
|||| |||||||||||| |||||||| |||| |||||| ||||||||||||||| ||| || |||| |||||||||||||||||||||||||| |
|
|
| T |
9850830 |
cacacatcaaataagtcttcaattgagcccatttttcataactctcattccaaatgtcatctagaactaacaagtatctcttaccagttaaat |
9850922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 178 - 329
Target Start/End: Original strand, 2911073 - 2911224
Alignment:
| Q |
178 |
ttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgag |
277 |
Q |
| |
|
||||||| ||||||||||||||||||| | | ||||||||| ||||| | ||||||| || |||| ||||| ||||||||||||||| |||| |
|
|
| T |
2911073 |
ttcttcaaaatagttttgacatcaaagtttttagagacacacacccatatcttcttttcgaaaatgttttctacttccttatcattgtataccaactgag |
2911172 |
T |
|
| Q |
278 |
caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagac |
329 |
Q |
| |
|
||||||||||||| || ||||||||||||||||||||||| | ||||||||| |
|
|
| T |
2911173 |
caagagctgtcttgcctaaaccaccaataccaacaatagctatcaaggagac |
2911224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 3002710 - 3002612
Alignment:
| Q |
6 |
agcaacacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaatt |
104 |
Q |
| |
|
|||| |||| ||||||||||||||||||||| |||| |||||||||||||| ||||||| ||| ||||| | ||| || ||||||| ||| ||||||| |
|
|
| T |
3002710 |
agcatcacacatcaaataagtcctcaattgagcccatttttcaaaactctcgttccaaatgtcatcgaggattaagaaaaatctcttcccatttaaatt |
3002612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 178 - 419
Target Start/End: Original strand, 3282404 - 3282639
Alignment:
| Q |
178 |
ttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgag |
277 |
Q |
| |
|
||||||| ||| || |||||||||||| ||| ||| | ||||||||||| |||||||||| |||||||||||| ||||||| || | || |||| |
|
|
| T |
3282404 |
ttcttcacaatggtcttgacatcaaagttattagatatacatacccacattttcttttcaaaatgattttgcacttcctcatcattataaatgaactgag |
3282503 |
T |
|
| Q |
278 |
caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttcttttt |
377 |
Q |
| |
|
|||||| |||||| || | ||| |||||||| |||||||||| | |||| |||| || ||| ||||||||| | ||||||||| |||||| |
|
|
| T |
3282504 |
caagagttgtcttgcctatacctccaatacctacaatagcaattgatgaga------tatttccacgtggttgcctcaagagatttataatctccttttt |
3282597 |
T |
|
| Q |
378 |
atcatcttctcttccaataatctctgattctaacacaaaaga |
419 |
Q |
| |
|
|||||||||||||||| | || | ||||||||||| |||||| |
|
|
| T |
3282598 |
atcatcttctcttccattgatatttgattctaacaaaaaaga |
3282639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 2980607 - 2980518
Alignment:
| Q |
16 |
atcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg |
105 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| ||||||| ||| || || | |||||||||| | ||||||||||||||| |
|
|
| T |
2980607 |
atcaaataagtcgtcaattgatcccacttttcattactcttgttccaaatgtcatctaggactaacaagtattttttaccagttaaattg |
2980518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Original strand, 3141901 - 3141985
Alignment:
| Q |
16 |
atcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagtta |
100 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||||| ||||||| ||| || || | |||||||||| | |||||||||| |
|
|
| T |
3141901 |
atcaaataagtcctcaattgagcccattttccaaaactctcgttccaaatgtcatctaggactaacaagtattttttaccagtta |
3141985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 178 - 419
Target Start/End: Complemental strand, 13791490 - 13791255
Alignment:
| Q |
178 |
ttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgag |
277 |
Q |
| |
|
||||||| ||| || |||||||||||| || ||| ||||||||||||| |||||||||| ||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
13791490 |
ttcttcacaatggtcttgacatcaaagttactagatacacatacccacattttcttttcaaaatgcttttgcacttccacatcattatatacgaatcgag |
13791391 |
T |
|
| Q |
278 |
caagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttcttttt |
377 |
Q |
| |
|
|||||| |||||| || | ||| |||||||| |||||| ||| | |||| |||| |||||| ||| |||| | ||||||||| |||||| |
|
|
| T |
13791390 |
caagagttgtcttgccaatacctccaatacctacaataacaattgacgaga------tatttccatgtggttgtgtcaagagatttataatctccttttt |
13791297 |
T |
|
| Q |
378 |
atcatcttctcttccaataatctctgattctaacacaaaaga |
419 |
Q |
| |
|
||||||||||||||| || || | ||||||||||| |||||| |
|
|
| T |
13791296 |
atcatcttctcttcccatgatgtttgattctaacaaaaaaga |
13791255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 3169995 - 3170090
Alignment:
| Q |
6 |
agcaacacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaa |
101 |
Q |
| |
|
|||| |||| |||||||||||| |||||||| |||| ||||||||||| || ||||||| || || |||| ||||| ||||||| || ||||||| |
|
|
| T |
3169995 |
agcaccacacatcaaataagtcttcaattgagcccatttttcaaaactgtcgttccaaatatcatctagaactaacaggtatctcatagcagttaa |
3170090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 6 - 503
Target Start/End: Complemental strand, 18356122 - 18355625
Alignment:
| Q |
6 |
agcaacacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg |
105 |
Q |
| |
|
|||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
18356122 |
agcaccacacatcaaataaggcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaactaacaagtatctcttaccagttaaattg |
18356023 |
T |
|
| Q |
106 |
gcttgaatcatattttgtaattcttctaatgtcttgtttacaacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaaagc |
205 |
Q |
| |
|
|||||| |||| |||| || |||||||||||||| |||||||| ||||||||||| |||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18356022 |
acttgaagcatactttgcaactcttctaatgtcttatttacaacgtcctctttggttaataacgcaaccatgttcttcagaatagttttgaaatcaaagt |
18355923 |
T |
|
| Q |
206 |
tatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaat |
305 |
Q |
| |
|
|||| |||||||||||||||| | |||||||||| |||||| ||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18355922 |
tatctgagacacatacccacatatgcttttcaaacaaatttttcacttcaccatctttgtataccagttgagcaagagctgtctttcccaaaccaccaat |
18355823 |
T |
|
| Q |
306 |
accaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctctgat |
405 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||| ||| |
|
|
| T |
18355822 |
accaacaatagcaaccaatgagacattctgatgttcatgtgattgcctcaacaagcttataatcttgtttttatcttcttctcttccaatgatctcagat |
18355723 |
T |
|
| Q |
406 |
tctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcacaac |
503 |
Q |
| |
|
||||||||| |||| | | ||||||||||||||| ||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
18355722 |
tctaacacataagagcaagtttccctccttacattgttagttttcgcaaccaccacaacattggagttaagtttcaaataagacatatctttctcaac |
18355625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 6 - 500
Target Start/End: Original strand, 10755385 - 10755882
Alignment:
| Q |
6 |
agcaacacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg |
105 |
Q |
| |
|
|||| |||| |||||||||||| | || |||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
10755385 |
agcaccacacatcaaataagtcattaactgatcccacttttcaaaactcttattccaaacgtcatccagaagtaacaagtatctcttaccagttaaattt |
10755484 |
T |
|
| Q |
106 |
gcttgaatcatattttgtaattcttctaatg-tcttgttta--caacactgtctttggttaacaacgcaaccaagttcttcagaatagttttgacatcaa |
202 |
Q |
| |
|
| ||| ||||||||| || | || |||| | ||| | ||| ||| |||||||| || | | || ||||||||||||||||||||| |||| |
|
|
| T |
10755485 |
tcacgaagcatattttgcaagttgtccaatgataatgtgtcatcaattttgttcttggttaatgactccaacatgttcttcagaatagttttgacgtcaa |
10755584 |
T |
|
| Q |
203 |
agctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccacc |
302 |
Q |
| |
|
|| ||||||||||||||||||||| |||||| |||||| ||| ||||||||| ||| ||||||||||||||||||||||| ||||| || |||||||| |
|
|
| T |
10755585 |
agttatcagagacacatacccacatactcttctcaaacaaatcttgcacttctctatcgttgtataccaattgagcaagagccgtcttccctaaaccacc |
10755684 |
T |
|
| Q |
303 |
aataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataatctct |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||| || | | |
|
|
| T |
10755685 |
aataccaacaatagcaaccaaggagacattctgattttcatgtgattgcatcaacaaacttataattttctttttatcatattctcttccaatgatattt |
10755784 |
T |
|
| Q |
403 |
gattctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttcac |
500 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| | ||||||||||||||| |||||||||||||||| |
|
|
| T |
10755785 |
gattctaacacaaaagaactagtttccctccttacatcgttagttttctcaaccactacaacatttgagttaagattcaacccagacatatctttcac |
10755882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 177 - 500
Target Start/End: Complemental strand, 45670 - 45347
Alignment:
| Q |
177 |
gttcttcagaatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattga |
276 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||| | ||| |||||| |||||||||||||||||||| |
|
|
| T |
45670 |
gttctttagaatagttttgacatcaaagttattagagacacatacccacatcctcttttcaaaagactttgttacttcaccatcattgtataccaattga |
45571 |
T |
|
| Q |
277 |
gcaagagctgtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttt |
376 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
45570 |
gcaagagctgtctttcccaaaccgccaatccctacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttatgatcttatttc |
45471 |
T |
|
| Q |
377 |
tatcatcttctcttccaataatctctgattctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaag |
476 |
Q |
| |
|
|||||||||||||||| || || ||||||||| ||||||||||||| |||||||||||||| | | ||| |||||||||||||||| | ||||| || |
|
|
| T |
45470 |
tatcatcttctcttccgatgatatctgattctgacacaaaagaacttgtttccctccttacaatgtcactttgctcaaccaccacaacatttgagtttag |
45371 |
T |
|
| Q |
477 |
attcaacacagacatatctttcac |
500 |
Q |
| |
|
||||||| |||||||||||||||| |
|
|
| T |
45370 |
attcaacccagacatatctttcac |
45347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 186 - 500
Target Start/End: Complemental strand, 50830 - 50515
Alignment:
| Q |
186 |
aatagttttgacatcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagct |
285 |
Q |
| |
|
||||||||||||||| | | ||||||||||||| ||||||| ||||||| |||| | |||| |||||| | |||||||| || ||||||||||||| | |
|
|
| T |
50830 |
aatagttttgacatcca-gttatcagagacacacacccacatactctttccaaaactcttttttacttcaccgtcattgtaaactaattgagcaagagtt |
50732 |
T |
|
| Q |
286 |
gtctttcccaaaccaccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatctt |
385 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| || |||| ||| |||||||||| || |||||||||||||| ||||| |||| ||| |||| |
|
|
| T |
50731 |
gtctttcccaaaccaccaatcccaacaatagcaaccacagaaacatgctggttttcatgtggttacctcaacaagcttaaaatctcattttaatcgtctt |
50632 |
T |
|
| Q |
386 |
ctcttccaataatctctgattctaacacaaaagaactactttccctccttacatcattagttttctcaaccac--cacaacactggagttaagattcaac |
483 |
Q |
| |
|
||||||| || || || ||||| ||||||||||||||| ||||| || ||||| ||| ||| ||| ||||| ||||| | | | ||| ||||||||| |
|
|
| T |
50631 |
ctcttccgatgatatcagattcgaacacaaaagaactattttccttctttacaatgttactttgctccaccaccacacaatatttgtgtttagattcaac |
50532 |
T |
|
| Q |
484 |
acagacatatctttcac |
500 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
50531 |
ccagacatatctttcac |
50515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 6 - 105
Target Start/End: Complemental strand, 45847 - 45748
Alignment:
| Q |
6 |
agcaacacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg |
105 |
Q |
| |
|
|||| |||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
45847 |
agcaccacacatcaaataagtcttcaattgatcccacttttctaaactctcattccaaacgtcatcaagaagtagcaagtatctcttaccagttaaattg |
45748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 6 - 104
Target Start/End: Complemental strand, 51013 - 50915
Alignment:
| Q |
6 |
agcaacacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaatt |
104 |
Q |
| |
|
|||| |||| || |||||||||||||||||| || |||||||||||||| ||||||| ||| || || | |||||||||||||||||| |||||||| |
|
|
| T |
51013 |
agcaccacacataaaataagtcctcaattgagaacatttttcaaaactctcgttccaaatgtcatctaggactaacaagtatctcttacctgttaaatt |
50915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 199 - 500
Target Start/End: Original strand, 3919073 - 3919374
Alignment:
| Q |
199 |
tcaaagctatcagagacacatacccacaaactcttttcaaaccaattttgcacttcagcatcattgtataccaattgagcaagagctgtctttcccaaac |
298 |
Q |
| |
|
|||||| |||| |||||||||||||||| |||| |||||||| | ||||||||||| |||||||||||| |||||||||||||| ||||||||| |||| |
|
|
| T |
3919073 |
tcaaagttatcggagacacatacccacatactcctttcaaacgagttttgcacttccacatcattgtatatcaattgagcaagagttgtctttcctaaac |
3919172 |
T |
|
| Q |
299 |
caccaataccaacaatagcaaccaaggagacattctgattttcatgtgattgcctcaacaagcttataatcttctttttatcatcttctcttccaataat |
398 |
Q |
| |
|
||||||| ||||||||| |||||| ||||||| |||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3919173 |
caccaatcccaacaataccaaccacaaagacattttgatttccatgtggttgcatcaacaagcttataatcttctttttatcatcttctcttccaatgat |
3919272 |
T |
|
| Q |
399 |
ctctgattctaacacaaaagaactactttccctccttacatcattagttttctcaaccaccacaacactggagttaagattcaacacagacatatctttc |
498 |
Q |
| |
|
|| ||||||||| |||| ||||| |||||||||||||| ||||||| | ||||||||||||| | ||||| ||||||||| |||||||||| ||| |
|
|
| T |
3919273 |
atccgattctaacgcaaatgaacttgtttccctccttacactcttagtttgttgaaccaccacaacatttgagtttagattcaacccagacatatcattc |
3919372 |
T |
|
| Q |
499 |
ac |
500 |
Q |
| |
|
|| |
|
|
| T |
3919373 |
ac |
3919374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 3918877 - 3918993
Alignment:
| Q |
6 |
agcaacacagatcaaataagtcctcaattgatcccacttttcaaaactctcattccaaacgtcgtcgagaagtaacaagtatctcttaccagttaaattg |
105 |
Q |
| |
|
|||| |||| |||||| |||||||||| ||| |||| |||||||||||||| ||||||| ||| || | || |||||||||||||||||| ||||||||| |
|
|
| T |
3918877 |
agcaccacacatcaaaaaagtcctcaagtgagcccatttttcaaaactctcgttccaaatgtcatccaaaactaacaagtatctcttacctgttaaattg |
3918976 |
T |
|
| Q |
106 |
gcttgaatcatattttg |
122 |
Q |
| |
|
| ||| ||||||||| |
|
|
| T |
3918977 |
tcacgaaacatattttg |
3918993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 32408720 - 32408650
Alignment:
| Q |
249 |
cacttcagcatcattgtataccaattgagcaagagctgtctttcccaaaccaccaataccaacaatagcaa |
319 |
Q |
| |
|
||||||| ||||||| || |||||||| ||||| || ||||||||||| || || |||||||||| ||||| |
|
|
| T |
32408720 |
cacttcatcatcattataaaccaattgcgcaagcgccgtctttcccaacccgcccataccaacaacagcaa |
32408650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University