View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_17 (Length: 501)
Name: NF21513_low_17
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 295 - 483
Target Start/End: Complemental strand, 20583359 - 20583171
Alignment:
| Q |
295 |
atgactaaattggaggtagttttcatttcaacaccaaccattggaaacatggttcccacaattgaatttgttaaccatctaaccaaacacaaccctcacc |
394 |
Q |
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| T |
20583359 |
atgactaaatttgaggtagttttcatctcaacaccaaccattggaaacatggttcccacagttgaatttgctaaccatctaaccaaacactaccctcaac |
20583260 |
T |
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| Q |
395 |
tttctgcaaccattctcatcatcaccataccaaaactaccactcgttaacacttacctccaatcacgtccttcctccgccactaatctc |
483 |
Q |
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| T |
20583259 |
tctctccaaccattctcatcatcaccataccaaagctaccactcgttaacacttacctccaatcacgtccttcctccgctgctaatctc |
20583171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 295 - 467
Target Start/End: Complemental strand, 17783020 - 17782848
Alignment:
| Q |
295 |
atgactaaattggaggtagttttcatttcaacaccaaccattggaaacatggttcccacaattgaatttgttaaccatctaaccaaacacaaccctcacc |
394 |
Q |
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| T |
17783020 |
atgactaaatatgaggtagttttcatctctacaccaaccattggaaacatggttccaactgttgagtttgctaaccatctaaccaaacaccaccctcaac |
17782921 |
T |
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| Q |
395 |
tttctgcaaccattctcatcatcaccataccaaaactaccactcgttaacacttacctccaatcacgtccttc |
467 |
Q |
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| T |
17782920 |
tctctgcaaccattctcgttatcacgatcccaaaactaccgctcgttaacacttacctccaatctcgttcttc |
17782848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 295 - 480
Target Start/End: Complemental strand, 20564205 - 20564020
Alignment:
| Q |
295 |
atgactaaattggaggtagttttcatttcaacaccaaccattggaaacatggttcccacaattgaatttgttaaccatctaaccaaacacaaccctcacc |
394 |
Q |
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| T |
20564205 |
atgaccaaatttgaggtagtttttgtatcaacaccagctattggaaacattgttcccattgttgaatttgctaacctcataaccaaactaaaccctcaat |
20564106 |
T |
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| Q |
395 |
tttctgcaaccattctcatcatcaccataccaaaactaccactcgttaacacttacctccaatcacgtccttcctccgccactaat |
480 |
Q |
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| T |
20564105 |
tctctgcaaccattctcatcatcaccatgccacaacgaccacttgttaacacttacatccaatcacgtccttcatccgcgactaat |
20564020 |
T |
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