View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_22 (Length: 418)
Name: NF21513_low_22
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 399
Target Start/End: Complemental strand, 2772348 - 2771993
Alignment:
| Q |
17 |
agagacggcattaggttgtggccatgggtgttgaaatcagtttagaacctgcaatgtcagctcatccaataagctgcgttatgtagtgttgctaagttag |
116 |
Q |
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| T |
2772348 |
agagacggcattaggttgtggccat---------aatcagtttagaacctgcaatgtcagctcatccaataagctgcgtta------------------g |
2772276 |
T |
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| Q |
117 |
gaagcttccagtggaagtaggaaaactttcagcacctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaagtgattttttgaat |
216 |
Q |
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| T |
2772275 |
gaagcttccagtggaagtaggaaaactttcagcacctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaagtgattttttgaat |
2772176 |
T |
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| Q |
217 |
cattgcagaaatttggtcattccacatttccacacaagcagcattatgaaacttgatgtgtagatgaagagcgaactgtcttgagtttggttttatatgt |
316 |
Q |
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| T |
2772175 |
cattgcagaaatttggtcattccacatttccacacaagcagcattatgaaacttgatgtgtagatgaagagtgaactgtcctgagtttggttttatatgt |
2772076 |
T |
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| Q |
317 |
aagtagctggcgaaaaggtcactttgagctgaaaccaggcccgggatccaatttagaccaattaatgaagaaatgatggatga |
399 |
Q |
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| T |
2772075 |
aagtagctggcgaaaaggtcactttgacctgaaaccaggcgcgggatccaatttagaccaattaatgaagaaatgatggatga |
2771993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 2794799 - 2794706
Alignment:
| Q |
110 |
aagttaggaagcttccagtggaagtaggaaaactttcagcacctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaag |
203 |
Q |
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| T |
2794799 |
aagttaggaagggtccactggaatcacgaaaagtttcagcacctaataggtgagctgatggaccacgatcctttgaagagaatgtggtagcaag |
2794706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 127 - 215
Target Start/End: Original strand, 2834450 - 2834536
Alignment:
| Q |
127 |
gtggaagtaggaaaactttcagcacctaataagtgagtagatggatcgtgatcctttaaagagaatgtggtagcaagtgattttttgaa |
215 |
Q |
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| T |
2834450 |
gtggaagtaggaatgctttcaacacctgataagtgagttgatggaccatgatccttt--agagaatgtggaagtaagtggtttcttgaa |
2834536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 261 - 357
Target Start/End: Complemental strand, 2794617 - 2794531
Alignment:
| Q |
261 |
tatgaaacttgatgtgtagatgaagagcgaactgtcttgagtttggttttatatgtaagtagctggcgaaaaggtcactttgagctgaaaccaggcc |
357 |
Q |
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| T |
2794617 |
tatgaaacttgatgtgtagatgaagagcaaagtgtct-gacttcggtt---------agtagctggcgaaaaggtcaatttgaactgaaaccaggcc |
2794531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 186
Target Start/End: Complemental strand, 2801159 - 2801068
Alignment:
| Q |
95 |
ttatgtagtgttgctaagttaggaagcttccagtggaagtaggaaaactttcagcacctaataagtgagtagatggatcgtgatcctttaaa |
186 |
Q |
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| T |
2801159 |
ttatgtagtattgctgagttaggaagagtccaatggaagtaggaatagatttaatacctaataagagagttgatggaccatgatcctttaaa |
2801068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 2794859 - 2794825
Alignment:
| Q |
34 |
gtggccatgggtgttgaaatcagtttagaacctgc |
68 |
Q |
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| T |
2794859 |
gtggccatggatgttgaaatcagtttagaacctgc |
2794825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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