View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_23 (Length: 407)
Name: NF21513_low_23
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_23 |
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| [»] scaffold0608 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 393; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 46933049 - 46933445
Alignment:
| Q |
1 |
cacattacattcattcatctcacaaattataacaatggactttccaaactctatgttcctcattgtcttaacatgtgtcaccatcattgtttttcttcgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933049 |
cacattacattcattcatctcacaaattataacaatggactttccaaactctatgttcctcattgtcttaacatgtgtcaccatcattgtttttcttcgt |
46933148 |
T |
|
| Q |
101 |
tcattctttgctaggatcacaaaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctc |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933149 |
tcattctttgcaaggatcacaaaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctc |
46933248 |
T |
|
| Q |
201 |
acaaatccttagccaatcttacaaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933249 |
acaaatccttagccaatcttacaaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaa |
46933348 |
T |
|
| Q |
301 |
ggaggtgcttctgaccaatgaccagttcttgtctaatagaaccattccacaatctgtgtcggttctcaaccacgagcattatagtcttgctttcata |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46933349 |
ggaggtgcttctgaccaatgaccagttcttgtctaatagaaccattccacaatctgtgtcggttctcaaccacgagcattatagtcttgctttcata |
46933445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 122 - 396
Target Start/End: Original strand, 46926305 - 46926579
Alignment:
| Q |
122 |
aaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatctta |
221 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||| || |
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| T |
46926305 |
aaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaagtcattggccaagctag |
46926404 |
T |
|
| Q |
222 |
caaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaatga |
321 |
Q |
| |
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| || |||||||| || |||| |||||||||||||||| |||||||||| | || |||||||||| | ||||| || ||||| || || |||||||| |
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| T |
46926405 |
cgaaaattcatggccctttaatgagtctcaagtttggccaaataaccactattgttatctcctcagcaacaatggctaaagaggttctcctaaccaatga |
46926504 |
T |
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| Q |
322 |
ccagttcttgtctaatagaaccattccacaatctgtgtcggttctcaaccacgagcattatagtcttgctttcat |
396 |
Q |
| |
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| |||||||||| || |||| ||| || ||| ||||||| ||||||||||| ||||| ||||||||||||||||| |
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| T |
46926505 |
caagttcttgtcaaagagaaacatacctcaaactgtgtcagttctcaaccatgagcagtatagtcttgctttcat |
46926579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 119 - 395
Target Start/End: Complemental strand, 11107756 - 11107480
Alignment:
| Q |
119 |
acaaaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatc |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||| || || || | |
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| T |
11107756 |
acaaaaccaacctataagcttccaccaggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaac |
11107657 |
T |
|
| Q |
219 |
ttacaaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaa |
318 |
Q |
| |
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|| | || || ||||| || |||| ||||||||| | || | |||||||||||| || |||| ||| | | ||||| || | || ||||| ||||| |
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| T |
11107656 |
ttgccaaaatatatggtcctttaatgagtctcaagctagggcaaataaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaa |
11107557 |
T |
|
| Q |
319 |
tgaccagttcttgtctaatagaaccattccacaatctgtgtcggttctcaaccacgagcattatagtcttgctttca |
395 |
Q |
| |
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|||| | |||||||| ||||| || |||||||||||||||| ||||||||||| || || ||||||||||| |||| |
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|
| T |
11107556 |
tgacaaattcttgtcaaataggactgttccacaatctgtgtcagttctcaaccatgaccaatatagtcttgcattca |
11107480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0608 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0608
Description:
Target: scaffold0608; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 119 - 395
Target Start/End: Complemental strand, 3195 - 2919
Alignment:
| Q |
119 |
acaaaaccaaactataagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaatc |
218 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| || |||||||| || || || | |
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| T |
3195 |
acaaaaccaacctataagcttccaccaggaccttcccctcttcccatcatagggaacctccttgaattaggacaaaagccccacaaatcattggctaaac |
3096 |
T |
|
| Q |
219 |
ttacaaagattcatggttctataataagtctcaagtttggccgaataaccactgtcgtcgtctcctcagccaacatggcaaaggaggtgcttctgaccaa |
318 |
Q |
| |
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|| | || || ||||| || |||| ||||||||| | || | |||||||||||| || |||| ||| | | ||||| || | || ||||| ||||| |
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| T |
3095 |
ttgccaaaatatatggtcctttaatgagtctcaagctagggcaaataaccactgttgttatctcttcatcaacaatggccaaacaagttcttctcaccaa |
2996 |
T |
|
| Q |
319 |
tgaccagttcttgtctaatagaaccattccacaatctgtgtcggttctcaaccacgagcattatagtcttgctttca |
395 |
Q |
| |
|
|||| | |||||||| ||||| || |||||||||||||||| ||||||||||| || || ||||||||||| |||| |
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|
| T |
2995 |
tgacaaattcttgtcaaataggactgttccacaatctgtgtcagttctcaaccatgaccaatatagtcttgcattca |
2919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 29975458 - 29975376
Alignment:
| Q |
134 |
aagcttccaccaggaccttcccctcttccaatcatagggaacctccttgaattaggagaaaaacctcacaaatccttagccaa |
216 |
Q |
| |
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|||||||||||||||||| | |||||||| ||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
29975458 |
aagcttccaccaggacctactcctcttcccttcataggaaacctccttcaattagggaaaaaacctcacaaatccttagccaa |
29975376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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