View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_24 (Length: 404)
Name: NF21513_low_24
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_24 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 981912 - 981540
Alignment:
| Q |
18 |
caatcaagataatattgtagtggaaacaaatcaattgttgttggtgactagatttcttagcatggttgctaagaggaaagattattgtccgatagatgtt |
117 |
Q |
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| T |
981912 |
caatcaagataatattgtagtgggaacaaatcaatcgttgttggtgactagatttcttggcatggttgctaagaggaaagattattgtccgatagatgtt |
981813 |
T |
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| Q |
118 |
gaagaatggtctcaaatgcccaagtcaataaaagacaatttatgagcacttattaaggtaacttctataattttgtgccgtgtagatagtagaatccttc |
217 |
Q |
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| T |
981812 |
gaagaatggtctcaaatgcccaggtcaataaaagacaacttatgggcacttattaaggtaacttctataattttgtgccgtgtatatagtagaatccttc |
981713 |
T |
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| Q |
218 |
atgcatcagtttttctctaggctgctatcatttggttcatttgttttccaagccattcaatatgaaatcaatttgtgtctcgcaaatgataagttatttc |
317 |
Q |
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| T |
981712 |
atgcatcagttttcctctaggctgctatcatttggttcatttgttttccaagccatttaatatgaaatcaatttgtgtctcgcaaatgatgagttatttc |
981613 |
T |
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| Q |
318 |
tgattatttattgctcattcggtgcatcttttgtcatgcttccagttcaatcaacattgcattttctattgtt |
390 |
Q |
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| T |
981612 |
tgattgtttattgttcattcggtgtatcttttgtcatgcttccagttcaatcagcattgcattttctattgtt |
981540 |
T |
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