View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_3 (Length: 624)
Name: NF21513_low_3
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 487; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 1 - 611
Target Start/End: Original strand, 35573814 - 35574424
Alignment:
| Q |
1 |
aaaatctaacaccaaacaattaactttgctttaagcaacaagataaattaaataaccactaattcatcccatttagtaatttgaaatctaaaaaaggcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
35573814 |
aaaatctaacaccaaacaattaactttgctttaagcaacaagataaattaaataaccactaattcatcccatttagcaatttgaaatctaaaaaaggcaa |
35573913 |
T |
|
| Q |
101 |
atgggtccatttcatatattaaaaagggtgggtaaagaaagtcataaaaataaataaatgaccctgcacattgaatcatggggtacaatacaagtagttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
35573914 |
atgggtccatttcatatattaaaaagggtgggtaaagaaagtcataaaaataaataaatgaccctgcacattgaatcatggggtacgatacaagtagttt |
35574013 |
T |
|
| Q |
201 |
tattttgatgcaacgtacatttaagttggttgaaccaagacannnnnnnnaacttagacaatgactcctttggcatttacaatgataagactatgtccct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35574014 |
tattttgatgcaacgtacatttaagttggttgaaccaagacattttttttaacttagacaatgactcctttggcatttacaatgataagactatgtccct |
35574113 |
T |
|
| Q |
301 |
caatatccttgtcattttctatacaacaat-aaaatcccctttcattccttttcacttccttcatttccttnnnnnnnnnnnnnnnagtcnnnnnnnnnt |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||| | |
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| T |
35574114 |
caatatccttgtcattttctatacaacaataaaaaacccctttcattccttttcacttccttcatttcctttctctcttctctctcagtc-aaaaaaaat |
35574212 |
T |
|
| Q |
400 |
aatacacatttcttgatctcaatcaaggttcttgattaattcttaatgtggttttgtgaaggtgtggttcaacaatgataatggtggcttcaaaagagaa |
499 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35574213 |
aatacacatttcttgatctcaatcaaggttcttgattaatacttaatgtggttttgtgaaggtgtggttcaacaatgataatggtggcttcaaaagagaa |
35574312 |
T |
|
| Q |
500 |
gactaatagtggtggatgcatgtttaggtactcggttttgattttgtctcttttggctttgtccattttggttctacctttggtgatgcctcctctacca |
599 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35574313 |
gactaatagtggtggatgcatgtttaggtactcggttttgattttgtctcttttggctttgtccattttggttctacctttggtgatgcctcctctacca |
35574412 |
T |
|
| Q |
600 |
ccaccacctttg |
611 |
Q |
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|||||||||||| |
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| T |
35574413 |
ccaccacctttg |
35574424 |
T |
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