View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_33 (Length: 341)
Name: NF21513_low_33
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 291; Significance: 1e-163; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 27959121 - 27959431
Alignment:
| Q |
19 |
aatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttct |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959121 |
aatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttct |
27959220 |
T |
|
| Q |
119 |
gctgtgtatatgcaagacaaagaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959221 |
gctgtgtatatgcaagacaaagaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatg |
27959320 |
T |
|
| Q |
219 |
ctgtttctaaaaccctagctgagaaagctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggaccctt |
318 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |
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| T |
27959321 |
ctgtttctaaaaccctagctgagaaagctgttcttgaatttggagaacaacatggtttggatattgtaactcttgtaccaagttttgttgttggaccctt |
27959420 |
T |
|
| Q |
319 |
catttgcccta |
329 |
Q |
| |
|
|||||||||| |
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|
| T |
27959421 |
tatttgcccta |
27959431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 27994611 - 27994927
Alignment:
| Q |
19 |
aatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttct |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| |
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|
| T |
27994611 |
aatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacattgaaaagagttatttacacctctagtgcttct |
27994710 |
T |
|
| Q |
119 |
gctgtgtatatgcaagacaaagaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatg |
218 |
Q |
| |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
27994711 |
gctgtgtatacgcaagataaagaagaagatacaatggatgaaagttattggagtgatgtgaatattcttagaactttgaagccatttgcttggtcatatg |
27994810 |
T |
|
| Q |
219 |
ctgtttctaaaaccctagctgagaaagctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggaccctt |
318 |
Q |
| |
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||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| || |
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| T |
27994811 |
gtgtttctaagacactagctgagaaagctgttcttgaatttggagaacaacatgggttggatattgtgactcttgtaccaccttttgttgtaggaccttt |
27994910 |
T |
|
| Q |
319 |
catttgccctatgctac |
335 |
Q |
| |
|
|||||| |||| ||||| |
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| T |
27994911 |
catttgtcctaagctac |
27994927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 23 - 335
Target Start/End: Original strand, 27985433 - 27985745
Alignment:
| Q |
23 |
gtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgctg |
122 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
27985433 |
gtgataaaaagaaccattgatggggcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttgtttacacctcaagtgcttctgctg |
27985532 |
T |
|
| Q |
123 |
tgtatatgcaagacaaagaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgt |
222 |
Q |
| |
|
||| |||||| ||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||| |
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|
| T |
27985533 |
tgtgcatgcaaaacaaagaagtagaggtaatggatgaaagttattggagtgatgtgaataatcttagaactttgaaaccttttgcttggtcatatgctgt |
27985632 |
T |
|
| Q |
223 |
ttctaaaaccctagctgagaaagctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcatt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| |||| | ||||||||||||||| |||||| |
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|
| T |
27985633 |
ttctaaaaccctagctgagaaagctgttcttgaatttggagaacaacatggtttggatattgtgactcttctacccacttttgttgttggacctttcatt |
27985732 |
T |
|
| Q |
323 |
tgccctatgctac |
335 |
Q |
| |
|
|| |||| ||||| |
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|
| T |
27985733 |
tgtcctaagctac |
27985745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 28013292 - 28013594
Alignment:
| Q |
22 |
agtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgct |
121 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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|
| T |
28013292 |
agtgacaaaaagaacaattgatggaacattaggaattctaaaagcatgcaaaaattcaaagaccgtgaagagagttatttacacttcaagtgcttctgct |
28013391 |
T |
|
| Q |
122 |
gtgtatatgcaagacaaagaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctg |
221 |
Q |
| |
|
|||||| |||||| ||||| || |||||||||||||| |||||||||||||||| ||| |||||||| ||||||| || ||||||||||||||| | |
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|
| T |
28013392 |
gtgtattggcaagataaagatgatgatgtaatggatgagagttattggagtgatgaaaatcttcttagagatttgaaaccatttgcttggtcatattcaa |
28013491 |
T |
|
| Q |
222 |
tttctaaaaccctagctgagaaagctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcat |
321 |
Q |
| |
|
|||||||||| | || |||||||||||||| |||||||||||||||||||| || ||| ||||||| | |||||| ||||||| ||||||| ||||| |
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| T |
28013492 |
tttctaaaactatggcagagaaagctgttcttgaatttggagaacaacatggtttagatgttgtgactataataccaacttttgttcttggaccattcat |
28013591 |
T |
|
| Q |
322 |
ttg |
324 |
Q |
| |
|
||| |
|
|
| T |
28013592 |
ttg |
28013594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 22 - 329
Target Start/End: Original strand, 28005353 - 28005660
Alignment:
| Q |
22 |
agtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgct |
121 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |
|
|
| T |
28005353 |
agtgacaaaaagaacaattgatggagcattaggaattctaaaagcatgcaaaaattcaaagaccgtgaagagagttatttacacttcaagtgcttcagca |
28005452 |
T |
|
| Q |
122 |
gtgtatatgcaagacaaagaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctg |
221 |
Q |
| |
|
|||||| |||||| ||||| || ||||||||||||| |||||||||||||||| |||||||||||| ||||||| || |||| |||||| ||| | |
|
|
| T |
28005453 |
gtgtattggcaagataaagatgacaatgtaatggatgagagttattggagtgatgaaaatattcttagagatttgaaaccatttggttggtcgtattcaa |
28005552 |
T |
|
| Q |
222 |
tttctaaaaccctagctgagaaagctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcat |
321 |
Q |
| |
|
|||||||||| | || ||||| | ||||||||| ||||||||||||| ||| || ||| ||||||| | |||||| ||| ||||||||| ||||||| |
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|
| T |
28005553 |
tttctaaaacaatggcagagaaggttgttctagagtttggagaacaacttggtttagatgttgtgactataataccaactttagttgttggatccttcat |
28005652 |
T |
|
| Q |
322 |
ttgcccta |
329 |
Q |
| |
|
||| |||| |
|
|
| T |
28005653 |
ttgtccta |
28005660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 27944572 - 27944826
Alignment:
| Q |
19 |
aatagtgacaaaaagaaccattgatggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttct |
118 |
Q |
| |
|
|||||||||||||||||| | || || |||||||| ||| |||||||||| ||||||||||||||||| ||| |||| ||||||||||||| |||| |
|
|
| T |
27944572 |
aatagtgacaaaaagaacagtcgacggcgcattaggcattttaaaagcatgtgtgaattcaaagacagtgaagagatttatatacacttcaagtggttct |
27944671 |
T |
|
| Q |
119 |
gctgtgtatatgcaa-gacaaagaagaagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatat |
217 |
Q |
| |
|
||||| | || ||| | ||||| ||||||| ||||||| ||| ||||||||||||| || | ||||||| | | || || |||| |||| ||| |
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|
| T |
27944672 |
gctgt-ttcattcaatggaaaagacaaagatgtgttggatgagagtgattggagtgatgttgatttgcttagaagtgttaaaccatttggttggaattat |
27944770 |
T |
|
| Q |
218 |
gctgtttctaaaaccctagctgagaaagctgttctagaatttggagaacaacatgg |
273 |
Q |
| |
|
||||||||||| || | ||||||||||||||||| |||||||| |||||| |||| |
|
|
| T |
27944771 |
gctgtttctaagacattggctgagaaagctgttcttgaatttggtgaacaaaatgg |
27944826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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