View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_34 (Length: 334)
Name: NF21513_low_34
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 317
Target Start/End: Original strand, 31295000 - 31295316
Alignment:
| Q |
1 |
cattgattggattcaaaaggttcaagcacatttcggttttggtcctctttgtgtttatctatccattaattacatggatcgtttcctttcggcatatcag |
100 |
Q |
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| T |
31295000 |
cattgattggattcaaaaggttcaatcacatttcggttttggtccgctttgtgtttatctatccattaattacatggatcgtttcctctctgcatatcaa |
31295099 |
T |
|
| Q |
101 |
ttcccagagagaagagattggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaat |
200 |
Q |
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| T |
31295100 |
ttcccagagagaagagattggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaat |
31295199 |
T |
|
| Q |
201 |
tgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagcaccttgaagtggagaatgcaggcaattac |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||| |
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| T |
31295200 |
tgcagattggtgaatccaagtttgtgtttgaagcaaaaaccattcagaaaatagagcttctggtactaaccacattgaagtggagaatgcaagcaattac |
31295299 |
T |
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| Q |
301 |
tcctttctccttcattg |
317 |
Q |
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||||||||||||||||| |
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| T |
31295300 |
tcctttctccttcattg |
31295316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 180 - 272
Target Start/End: Original strand, 31301144 - 31301236
Alignment:
| Q |
180 |
atgttcctcggattcttgaattgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagca |
272 |
Q |
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| T |
31301144 |
atgttcctccgaattttgatttgcagattagtgaatccaagtttgtgtttgaaggtaaaaccattcagaaaatggagcttctagtactgagca |
31301236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 264 - 317
Target Start/End: Original strand, 31301998 - 31302051
Alignment:
| Q |
264 |
tactaagcaccttgaagtggagaatgcaggcaattactcctttctccttcattg |
317 |
Q |
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| T |
31301998 |
tactgagcacattgaagtggagaatgcaagcaattactcctttctccttcattg |
31302051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 317
Target Start/End: Complemental strand, 46341967 - 46341851
Alignment:
| Q |
201 |
tgcagattggtgaatccaagtttgtgtttgaagtaaaaaccattcagaaaatagagcttctagtactaagcaccttgaagtggagaatgcaggcaattac |
300 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||| |||| ||| |||||||||||||| ||||| ||||||||||||||||| |||||||| |
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| T |
46341967 |
tgcagattggtgaatccaagtttgtatttgaagctaaaaccatacagagaatggagcttctagtactcagcacattgaagtggagaatgcaagcaattac |
46341868 |
T |
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| Q |
301 |
tcctttctccttcattg |
317 |
Q |
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||| ||||||||||||| |
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| T |
46341867 |
tccattctccttcattg |
46341851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 46342350 - 46342278
Alignment:
| Q |
18 |
aggttcaagcacatttcggttttggtcctctttgtgtttatctatccattaattacatggatcgtttcctttc |
90 |
Q |
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| T |
46342350 |
aggttcgagcacatttcggttttggtcctctttgtgcttatctatccattaattacatggatcgtttcctttc |
46342278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 46342165 - 46342071
Alignment:
| Q |
111 |
gaagagattggtcaatgcaattgttggctgttgcttgcttatctttggcagccaaagtagacgaaaccgatgttcctcggattcttgaattgcag |
205 |
Q |
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|||||| |||| ||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| | |||||||| | |||||| |||||| |
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| T |
46342165 |
gaagagcttggacaatgcaattgttggctgtagcttgcttatctttggcagctaaagtagaggaaactgctgttcctcagcctcttgatttgcag |
46342071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 317
Target Start/End: Complemental strand, 27699772 - 27699708
Alignment:
| Q |
253 |
agagcttctagtactaagcaccttgaagtggagaatgcaggcaattactcctttctccttcattg |
317 |
Q |
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||||||||| |||||||||| ||||| ||||||||||| |||||||| |||||||||| ||||| |
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| T |
27699772 |
agagcttctgatactaagcacattgaactggagaatgcaagcaattacacctttctcctacattg |
27699708 |
T |
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