View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_36 (Length: 314)
Name: NF21513_low_36
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 30897781 - 30897477
Alignment:
| Q |
1 |
gactgaagtttattgccaataaccaattcaaaatacataaaacaagagcaatgtttataatcatgaattatg---------catccaagatccactctcc |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30897781 |
gactgaagtttattgccaataaccaattcaaaatacataaaacaagaccaatgtttataatcatgaattatgacaattatgcatccaagatccactctcc |
30897682 |
T |
|
| Q |
92 |
accaaaccactcatgatgaactctgatctgatcatagcggtagtaattcgtctctgagctagtggtgaaatacacccaatagcaatggccctcttcagca |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30897681 |
accaaaccactcatgatgaactctgatctgatcatagcggtagtaattcgtctctgagctagtgctgaaatacacccaatagcaatggccctcttcagca |
30897582 |
T |
|
| Q |
192 |
gtgatgatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacac |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897581 |
gtgatgatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacac |
30897482 |
T |
|
| Q |
292 |
gtggt |
296 |
Q |
| |
|
||||| |
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|
| T |
30897481 |
gtggt |
30897477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 295
Target Start/End: Original strand, 30962905 - 30962987
Alignment:
| Q |
213 |
atttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacacgtgg |
295 |
Q |
| |
|
|||| |||||||||||||||||| |||| ||| |||||||||| |||||||||||||| | | |||||| ||||||||||| |
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|
| T |
30962905 |
attttccctacccaccaaccatctttataaaaaacatcaactttttgattgagttgaaacttagaaggatttcgaacacgtgg |
30962987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 192 - 295
Target Start/End: Original strand, 5963476 - 5963579
Alignment:
| Q |
192 |
gtgatgatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacac |
291 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||| || | |||||||||||||| |||||||||||||| ||| ||||| ||||||||| |
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|
| T |
5963476 |
gtgatgatcttctcactagtgatttgccctaaccaccaaccatcgttgtcaaaagcatcaactttttgattgagttgaaactcacgaggactacgaacac |
5963575 |
T |
|
| Q |
292 |
gtgg |
295 |
Q |
| |
|
|||| |
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|
| T |
5963576 |
gtgg |
5963579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 38788934 - 38788864
Alignment:
| Q |
197 |
gatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagtt |
267 |
Q |
| |
|
||||||||| || | ||||| |||||||||||||||||| |||| || ||||||||||||||||||||| |
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|
| T |
38788934 |
gatcttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagtt |
38788864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 296
Target Start/End: Complemental strand, 38782762 - 38782663
Alignment:
| Q |
197 |
gatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaa-ttcatgaggattacgaacacgtgg |
295 |
Q |
| |
|
||||||||| || | ||||| ||||||||||||||||| |||| || |||||||||| |||||||||| ||| |||| ||||||||||||| |||| |
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| T |
38782762 |
gatcttctcgctagcgattttacctacccaccaaccatcgttatcaaatacatcaactttttgattgagtttaaacttca-aaggattacgaacatgtgg |
38782664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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