View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_38 (Length: 292)
Name: NF21513_low_38
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_38 |
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| [»] scaffold0830 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 288
Target Start/End: Original strand, 5079491 - 5079761
Alignment:
| Q |
18 |
tgaataaggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5079491 |
tgaataaggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaat |
5079590 |
T |
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| Q |
118 |
agaagatacatgagctaaaagttcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcacta |
217 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5079591 |
agaggatacatgagctaaaagttcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcacta |
5079690 |
T |
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| Q |
218 |
atccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgtgatgatgtccat |
288 |
Q |
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| T |
5079691 |
atccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttctttcctgtgaagatttccat |
5079761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 5120305 - 5120174
Alignment:
| Q |
140 |
tcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaatt |
239 |
Q |
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||||||||||||||| |||| |||||| |||| || ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
5120305 |
tcatgaatttctttctcatgttgtgagcctaaattgtaatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaatt |
5120206 |
T |
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| Q |
240 |
cttctgcaaacatttcatctgttggcttcttt |
271 |
Q |
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| T |
5120205 |
cttctgaaaacatttcatttgttggcttcttt |
5120174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 140 - 271
Target Start/End: Complemental strand, 5102680 - 5102549
Alignment:
| Q |
140 |
tcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaatt |
239 |
Q |
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||||||||||||||| |||| |||||| |||| || ||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||| |
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| T |
5102680 |
tcatgaatttctttctcatgttgtgagcctaaattgtaatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaatt |
5102581 |
T |
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| Q |
240 |
cttctgcaaacatttcatctgttggcttcttt |
271 |
Q |
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| T |
5102580 |
cttctgaaaacatttcatttgttggcatcttt |
5102549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 5102750 - 5102690
Alignment:
| Q |
49 |
agttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaa |
109 |
Q |
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| T |
5102750 |
agttacatctgtcatattaatccgagcctcaggtgaatcttcacaacatctcaatgctaaa |
5102690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 5120400 - 5120315
Alignment:
| Q |
24 |
aggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaa |
109 |
Q |
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| T |
5120400 |
aggtcttgatcttgattaacgaggtagttgcatctgtcatattaatccgagcctcaggtgaatcttcacagcatctcaatgctaaa |
5120315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 16887064 - 16886793
Alignment:
| Q |
17 |
atgaataaggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaa |
116 |
Q |
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||||||||| |||||||||| | || ||||||||||||||||| |||| ||| ||||| || ||| ||||| ||||||| |||||||||||| | |||| |
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| T |
16887064 |
atgaataagatcttgattttgattagtgatgcagttacatctgccatactaatccttgcttctggtgaatctgcacaacatctcaatgctaaatccaaaa |
16886965 |
T |
|
| Q |
117 |
tagaagatacatgagctaaaagttcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcact |
216 |
Q |
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||| |||||||| | || || ||||||| |||| ||||| || ||||||||||| || ||||||||||||||||||||||||| | ||||| ||||| |
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| T |
16886964 |
cagatgatacatgtgatacaatttcatgagtttcattcccttgttgtgagactaaattgtaatccacaacttccataactgaattaggcattgactcact |
16886865 |
T |
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| Q |
217 |
aatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttcttttctgtgatgatgtccat |
288 |
Q |
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| T |
16886864 |
aatccatgtttttaaggttaattcttgtacaaacatttcatttgttggcttctttcctgtgaagatttccat |
16886793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 145 - 271
Target Start/End: Original strand, 14411825 - 14411951
Alignment:
| Q |
145 |
aatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttct |
244 |
Q |
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| T |
14411825 |
aatttctttcccatgttgcgagtctagattgtaatccacaacttccatactcgaattggccatcgattcgctaatccaagttttcaaagttaattcttct |
14411924 |
T |
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| Q |
245 |
gcaaacatttcatctgttggcttcttt |
271 |
Q |
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| T |
14411925 |
gaaaacatttcatttgttggcttcttt |
14411951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 25474944 - 25475011
Alignment:
| Q |
53 |
acatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaataga |
120 |
Q |
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| T |
25474944 |
acatctgccatattaattcttgctttaggtaaatcttcacaacaactgagggctaaaccaaaaataga |
25475011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 25714975 - 25715076
Alignment:
| Q |
166 |
gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc |
265 |
Q |
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|||||| |||||||||| || ||||||| |||||| | | ||||||||| ||||| || |||||| ||| |||| | ||||||| |||||||||||| |
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| T |
25714975 |
gactaaatttgaatccatgacctccataattgaattaggcaatgattcactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc |
25715074 |
T |
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| Q |
266 |
tt |
267 |
Q |
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|| |
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| T |
25715075 |
tt |
25715076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 4927 - 4833
Alignment:
| Q |
26 |
gtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaataga |
120 |
Q |
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||||||||||||| || || ||| | |||||||||||||||| |||||| || ||| ||| ||| ||||| |||| |||||| |||||||||| |
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| T |
4927 |
gtcttgatttttattagcgacgcaataacatctgtcatattaattcttgcttccggtgaatattcgcaacaattcaaagctaaaccaaaaataga |
4833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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