View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21513_low_39 (Length: 285)

Name: NF21513_low_39
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21513_low_39
NF21513_low_39
[»] chr2 (5 HSPs)
chr2 (18-268)||(5079491-5079741)
chr2 (140-268)||(5120177-5120305)
chr2 (140-265)||(5102555-5102680)
chr2 (49-109)||(5102690-5102750)
chr2 (24-109)||(5120315-5120400)
[»] chr3 (1 HSPs)
chr3 (17-268)||(16886813-16887064)
[»] chr6 (1 HSPs)
chr6 (145-268)||(14411825-14411948)
[»] chr8 (2 HSPs)
chr8 (53-120)||(25474944-25475011)
chr8 (166-267)||(25714975-25715076)
[»] scaffold0830 (1 HSPs)
scaffold0830 (26-120)||(4833-4927)


Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 5079491 - 5079741
Alignment:
Q  18 tgaataaggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5079491 tgaataaggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaat 5079590  T
Q  118 agaagatacatgagctaaaagttcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcacta 217  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5079591 agaggatacatgagctaaaagttcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcacta 5079690  T
Q  218 atccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttc 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5079691 atccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttc 5079741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 268
Target Start/End: Complemental strand, 5120305 - 5120177
Alignment:
Q  140 tcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaatt 239  Q
    ||||||||||||||| |||| |||||| |||| ||  |||||||||||||||||   |||||    ||||||||| ||||||||||||||||||||||||    
T  5120305 tcatgaatttctttctcatgttgtgagcctaaattgtaatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaatt 5120206  T
Q  240 cttctgcaaacatttcatctgttggcttc 268  Q
    |||||| ||||||||||| ||||||||||    
T  5120205 cttctgaaaacatttcatttgttggcttc 5120177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 140 - 265
Target Start/End: Complemental strand, 5102680 - 5102555
Alignment:
Q  140 tcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaatt 239  Q
    ||||||||||||||| |||| |||||| |||| ||  |||||||||||||||||   |||||    ||||||||| ||||||||||||||||||||||||    
T  5102680 tcatgaatttctttctcatgttgtgagcctaaattgtaatccacaacttccatactggaattcgccattgattcagtaatccaagttttcaaggttaatt 5102581  T
Q  240 cttctgcaaacatttcatctgttggc 265  Q
    |||||| ||||||||||| |||||||    
T  5102580 cttctgaaaacatttcatttgttggc 5102555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 5102750 - 5102690
Alignment:
Q  49 agttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaa 109  Q
    ||||||||||||||||||||  |  ||||||||| ||||||||||||| ||||||||||||    
T  5102750 agttacatctgtcatattaatccgagcctcaggtgaatcttcacaacatctcaatgctaaa 5102690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 109
Target Start/End: Complemental strand, 5120400 - 5120315
Alignment:
Q  24 aggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaa 109  Q
    |||||||||| || | ||| || | |||| |||||||||||||||  |  ||||||||| |||||||||| || ||||||||||||    
T  5120400 aggtcttgatcttgattaacgaggtagttgcatctgtcatattaatccgagcctcaggtgaatcttcacagcatctcaatgctaaa 5120315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 16887064 - 16886813
Alignment:
Q  17 atgaataaggtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaa 116  Q
    ||||||||| |||||||||| | || ||||||||||||||||| |||| |||  ||||| || ||| ||||| ||||||| |||||||||||| | ||||    
T  16887064 atgaataagatcttgattttgattagtgatgcagttacatctgccatactaatccttgcttctggtgaatctgcacaacatctcaatgctaaatccaaaa 16886965  T
Q  117 tagaagatacatgagctaaaagttcatgaatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcact 216  Q
     ||| |||||||| | || || ||||||| |||| ||||| || ||||||||||| ||  |||||||||||||||||||||||||  | ||||| |||||    
T  16886964 cagatgatacatgtgatacaatttcatgagtttcattcccttgttgtgagactaaattgtaatccacaacttccataactgaattaggcattgactcact 16886865  T
Q  217 aatccaagttttcaaggttaattcttctgcaaacatttcatctgttggcttc 268  Q
    |||||| ||||| ||||||||||||| | |||||||||||| ||||||||||    
T  16886864 aatccatgtttttaaggttaattcttgtacaaacatttcatttgttggcttc 16886813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 145 - 268
Target Start/End: Original strand, 14411825 - 14411948
Alignment:
Q  145 aatttctttcccatgctgtgagactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttct 244  Q
    ||||||||||||||| || ||| |||  ||  |||||||||||||||||   ||||||   || ||||| ||||||||||||||||| ||||||||||||    
T  14411825 aatttctttcccatgttgcgagtctagattgtaatccacaacttccatactcgaattggccatcgattcgctaatccaagttttcaaagttaattcttct 14411924  T
Q  245 gcaaacatttcatctgttggcttc 268  Q
    | ||||||||||| ||||||||||    
T  14411925 gaaaacatttcatttgttggcttc 14411948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 120
Target Start/End: Original strand, 25474944 - 25475011
Alignment:
Q  53 acatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaataga 120  Q
    ||||||| |||||||| |||||| | |||||||||||||||||| || |  |||||| ||||||||||    
T  25474944 acatctgccatattaattcttgctttaggtaaatcttcacaacaactgagggctaaaccaaaaataga 25475011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 25714975 - 25715076
Alignment:
Q  166 gactaattttgaatccacaacttccataactgaattgtgtattgattcactaatccaagttttcaaggttaattcttctgcaaacatttcatctgttggc 265  Q
    |||||| ||||||||||  || ||||||| ||||||  | | ||||||||| ||||| || |||||| ||| |||| |  ||||||| ||||||||||||    
T  25714975 gactaaatttgaatccatgacctccataattgaattaggcaatgattcactgatccatgtcttcaagcttagttctgcaacaaacatatcatctgttggc 25715074  T
Q  266 tt 267  Q
    ||    
T  25715075 tt 25715076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0830 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0830
Description:

Target: scaffold0830; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 4927 - 4833
Alignment:
Q  26 gtcttgatttttactaatgatgcagttacatctgtcatattaactcttgcctcaggtaaatcttcacaacacctcaatgctaaaacaaaaataga 120  Q
    ||||||||||||| ||  || ||| | |||||||||||||||| |||||| || ||| ||| ||| |||||  |||| |||||| ||||||||||    
T  4927 gtcttgatttttattagcgacgcaataacatctgtcatattaattcttgcttccggtgaatattcgcaacaattcaaagctaaaccaaaaataga 4833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University