View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_4 (Length: 621)
Name: NF21513_low_4
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 214 - 602
Target Start/End: Original strand, 41805146 - 41805525
Alignment:
| Q |
214 |
agagagcacttcaaatcaggatttctactgcagaagaaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
313 |
Q |
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| T |
41805146 |
agagagcacttcaaatcaggatttctactgcagaagcaacaatggccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaa |
41805245 |
T |
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| Q |
314 |
cagtgtgatatctggaatcgatactgtaagcttaaannnnnnngacaaccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggtt |
413 |
Q |
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| T |
41805246 |
cagtgtgatatctggaatcgatactgtaagcttaaatttttttgacatccacaaaaatattgagaaccg---------catctcacatgagcttcaggtt |
41805336 |
T |
|
| Q |
414 |
acaaaagaatatatcaataagatgaacaaggaaaggaggcagttacagacagatnnnnnnnccatttgttggaggagctgcagggtaaaagggaagagga |
513 |
Q |
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| T |
41805337 |
acaaaagaatatatcaataagatgaacaaggaaaagaggcagttacagacagat-aaaaaaccatttgttggaggagctgcagggtaaaagggaagagga |
41805435 |
T |
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| Q |
514 |
attaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaaggggg-aatcagagaagatgaatgtgacaacaattgttgttg |
602 |
Q |
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| T |
41805436 |
attaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaagggggaaatcagagaagatgaatgtgacaacaattgttgttg |
41805525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 262 - 599
Target Start/End: Original strand, 41812017 - 41812352
Alignment:
| Q |
262 |
ctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgtaagcttaaannnnnnngacaa |
361 |
Q |
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| T |
41812017 |
ctgacaatgaagcttttcatgaaactatcacaagtattaaaaagtgtgtcaacagtatgatatctgggatagatactataagctctaaattttcggatga |
41812116 |
T |
|
| Q |
362 |
ccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggttacaaaagaatatatcaataagatgaacaaggaaaggaggcagttacag |
461 |
Q |
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| ||| ||| ||||||||||||||||||||||||| | |||||||||||| ||||||||| | ||||| |||||| | ||||| | ||||||||||| |
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| T |
41812117 |
ctgcaataattatgagaaccgcatctcaaacatctcatacgagcttcaggttgcaaaagaatctgtcaatgagatgagtagggaaaaggggcagttacag |
41812216 |
T |
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| Q |
462 |
acagatnnnnnnnccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaagaaa |
561 |
Q |
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| T |
41812217 |
acagataaaaa--ccatttattggaggagttgcagggtaaaaaggaagagggatcaactctgcagaaagaggttgaaaagctagaggcaaaggcaagaaa |
41812314 |
T |
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| Q |
562 |
gggggaatcagagaagatgaatgtgacaacaattgttg |
599 |
Q |
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| T |
41812315 |
ggaggaatcagagaagatgaatgtgacagcaactgttg |
41812352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 43 - 157
Target Start/End: Original strand, 41804727 - 41804841
Alignment:
| Q |
43 |
agtggttgacaatgaaaagaatgaattagccaacaaaaacatggatcttcagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaa |
142 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41804727 |
agtggttgacaatgaaaagaatgaattagccaacaaaaacatggatcttcagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaa |
41804826 |
T |
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| Q |
143 |
tatgaacaagttaac |
157 |
Q |
| |
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||||||||||||||| |
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| T |
41804827 |
tatgaacaagttaac |
41804841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 259 - 602
Target Start/End: Original strand, 41798798 - 41799139
Alignment:
| Q |
259 |
ccgctgacaatgaagcttttcatgaaactatcacaagtactaaagagtggttcaacagtgtgatatctggaatcgatactgtaagcttaaannnnnnnga |
358 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| || |||||| | ||| || || |
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| T |
41798798 |
ccgctaacaatgaagcttttcatgaaactatcacaagtgttaaagtgtgtgtcaacagtgtgatatctgggatagatactttgagccggaaattttccga |
41798897 |
T |
|
| Q |
359 |
caaccacaaaaatattgagaaccgcatctcaaacatctcacatgagcttcaggttacaaaagaatatatcaataagatgaacaaggaaaggaggcagtta |
458 |
Q |
| |
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| | ||||||| ||||||| ||| ||||||||||| ||||||||||||||| ||||||||| | ||| |||||||| | || | | |||||||| |
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| T |
41798898 |
cgaaagcaaaaatcatgagaactacatatcaaacatctcccatgagcttcaggttgcaaaagaatctgtcagcaagatgaatagggtgaaggggcagtta |
41798997 |
T |
|
| Q |
459 |
cagacagatnnnnnnnccatttgttggaggagctgcagggtaaaagggaagaggaattaactctgagggaaaaggttgaaaagctagaggcaaaggcaag |
558 |
Q |
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| T |
41798998 |
cagagagataaagattg--tttgttagaggaactgcagggtaaaaaggaaggggaattaactctgagggaaaaggttgagaagctagaggtgaaggcaag |
41799095 |
T |
|
| Q |
559 |
aaagggggaatcagagaagatgaatgtgacaacaattgttgttg |
602 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||| |||||||| |
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| T |
41799096 |
aaaggaggaatcagagaagatgaatgtgacagcaactgttgttg |
41799139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 41798336 - 41798442
Alignment:
| Q |
45 |
tggttgacaatgaaaagaatgaattagccaacaaaaacatggatcttcagagaacattagcagaacgagcagatgcatatcagaatttgaataaagaata |
144 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||| || ||||||||||||||| |||||| ||||||| |
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| T |
41798336 |
tggttgacaatgaaaagaatgaattagcctacaaaaacatggatcttcagagaacattggaagaacaagaagatgcatatcagaagttgaatgaagaata |
41798435 |
T |
|
| Q |
145 |
tgaacaa |
151 |
Q |
| |
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| ||||| |
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| T |
41798436 |
taaacaa |
41798442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 41805049 - 41805111
Alignment:
| Q |
158 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
220 |
Q |
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| T |
41805049 |
cttcgcttgtcaaaccaaaatatccgggacaaagaacaattgctaagtgaaaagggagagagc |
41805111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41804576 - 41804619
Alignment:
| Q |
1 |
cacaggggaatttgttgatgggagagaaaatagatcatttggag |
44 |
Q |
| |
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| T |
41804576 |
cacaggagaatttgttgatgggagagaaattagatcatttggag |
41804619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 158 - 220
Target Start/End: Original strand, 41798656 - 41798718
Alignment:
| Q |
158 |
cttcgcctgtcaaaccaaaatatccgggacaaagaacaattgctaactgaaaagggagagagc |
220 |
Q |
| |
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| T |
41798656 |
cttcgcctgtcaaaccaaaagctccgggttacagaacaattgctaagtgaaaaggaagagagc |
41798718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 46 - 79
Target Start/End: Original strand, 41811628 - 41811661
Alignment:
| Q |
46 |
ggttgacaatgaaaagaatgaattagccaacaaa |
79 |
Q |
| |
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||||||||||||||| |||||||||||||||||| |
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| T |
41811628 |
ggttgacaatgaaaataatgaattagccaacaaa |
41811661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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