View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_41 (Length: 269)
Name: NF21513_low_41
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_41 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 49015846 - 49015689
Alignment:
| Q |
18 |
ataaagataacaagtatctcatgtgatcataaaaacaaataaaaataccattgttagacaatccataaccagttcccacaagtgttgtagttagcaactt |
117 |
Q |
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| T |
49015846 |
ataaagataacaagtatctcatgtgatcataaaaacaaataaaaataccattgttagacaatccataaccagttcccacaagtgttgtagttagcaactt |
49015747 |
T |
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| Q |
118 |
tgcaacaatgcacttcccattaacactgagagttgcttcttgaagctcctctgttaat |
175 |
Q |
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| T |
49015746 |
tgcaacaatgcacttcccattaacactgagagttgcttcttgaagctcctctgttaat |
49015689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 250
Target Start/End: Complemental strand, 49015652 - 49015609
Alignment:
| Q |
207 |
ctatgttaaacagatcaattttagtttctactatactctacgat |
250 |
Q |
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| T |
49015652 |
ctatgttaaacagatcaattttagtttctactatactctacgat |
49015609 |
T |
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