View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_43 (Length: 246)
Name: NF21513_low_43
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_43 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 8e-76; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 44005619 - 44005468
Alignment:
| Q |
95 |
atcaatgagcatttcccttatccaaacaaatctctgaaatatctttccttttctctctttcctatccaatttaactgtaattaattttgttttctacttt |
194 |
Q |
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| T |
44005619 |
atcaatgagcatttcccttatccaaacaaatctctgaaagatctttccttttctctctttcctatccaatttaactgtaattaattttgctttctacttt |
44005520 |
T |
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| Q |
195 |
tctatattatatacaatgcaatccactttcctcactagccactataaataag |
246 |
Q |
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| T |
44005519 |
tctatattatatacaatgcaatccactttcctcactagccactataaataag |
44005468 |
T |
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Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 44009056 - 44009153
Alignment:
| Q |
1 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatca |
98 |
Q |
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| T |
44009056 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatca |
44009153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 44005130 - 44005227
Alignment:
| Q |
1 |
atccaacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatca |
98 |
Q |
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| T |
44005130 |
atcctacaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccatatgtatca |
44005227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 95 - 246
Target Start/End: Complemental strand, 44009549 - 44009391
Alignment:
| Q |
95 |
atcaatgagcatttcccttatccaaacaaatctctgaaatatcttt-----ccttttctct--ctttcctatccaatttaactgtaattaattttgtttt |
187 |
Q |
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| T |
44009549 |
atcaatgagcatttcccttatccaaacaaatatgtgaaagaactttaaattccttttctctttctttcctatccaatttaactataattatttctgtttt |
44009450 |
T |
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| Q |
188 |
ctacttttctatattatatacaatgcaatccactttcctcactagccactataaataag |
246 |
Q |
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| T |
44009449 |
atacttttctatatattatatattgcaatccactttcctcacaaaccactataaataag |
44009391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 91
Target Start/End: Complemental strand, 39846852 - 39846770
Alignment:
| Q |
6 |
acaaattttccacctatgaacactgctggaactgaagggttacatccaaaattacccctcaaagcccattccatttctctaccata |
91 |
Q |
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| T |
39846852 |
acaaattttccaccaatgaacactgctggcactgaagggttacatccaa---gactcctcaaagccctttccatttccctaccata |
39846770 |
T |
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