View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21513_low_44 (Length: 240)

Name: NF21513_low_44
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21513_low_44
NF21513_low_44
[»] chr3 (3 HSPs)
chr3 (1-138)||(25293683-25293826)
chr3 (170-218)||(25293817-25293868)
chr3 (173-211)||(8187165-8187203)
[»] chr5 (23 HSPs)
chr5 (43-212)||(30206652-30206821)
chr5 (43-222)||(29872294-29872473)
chr5 (43-212)||(30435946-30436115)
chr5 (43-222)||(29853431-29853610)
chr5 (78-222)||(30242214-30242358)
chr5 (43-222)||(30749763-30749942)
chr5 (43-212)||(30713232-30713401)
chr5 (46-210)||(30676978-30677142)
chr5 (72-222)||(30338358-30338508)
chr5 (43-222)||(30060489-30060668)
chr5 (72-222)||(30483524-30483674)
chr5 (43-202)||(30400214-30400373)
chr5 (51-214)||(30521440-30521603)
chr5 (51-214)||(30561780-30561943)
chr5 (43-222)||(17983027-17983206)
chr5 (43-215)||(30330938-30331110)
chr5 (103-212)||(30475505-30475614)
chr5 (173-211)||(15347065-15347103)
chr5 (173-211)||(17927655-17927693)
chr5 (173-214)||(15083010-15083051)
chr5 (173-210)||(15335696-15335733)
chr5 (171-203)||(15357342-15357374)
chr5 (174-206)||(16396737-16396769)
[»] chr1 (2 HSPs)
chr1 (6-222)||(7099541-7099763)
chr1 (1-219)||(7581478-7581702)
[»] chr4 (3 HSPs)
chr4 (43-222)||(52352078-52352258)
chr4 (43-202)||(20296389-20296548)
chr4 (1-138)||(13616801-13616944)
[»] chr7 (1 HSPs)
chr7 (72-212)||(26707465-26707605)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 25293683 - 25293826
Alignment:
Q  1 ttccaaaagatacaaaaatcgataaggaagaattgactcatct------ggctaatggatttatttcatctagggaaaatttggaggttgaagatgttgg 94  Q
    |||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25293683 ttccaaaagatacaaaaatcgataaggaagaattgactcatctttggatggctaatggatttatttcatctagggaaaatttggaggttgaagatgttgg 25293782  T
Q  95 cagcatggtttggaatgaattgtgccaaaaatcattatttcaag 138  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  25293783 cagcatggtttggaatgaattgtgccaaaaatcattctttcaag 25293826  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 170 - 218
Target Start/End: Original strand, 25293817 - 25293868
Alignment:
Q  170 ttctttcaagatgcatga---tcttgtccatgatcttgctcaatcaatagtg 218  Q
    ||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  25293817 ttctttcaagatgcatgatgatcttgtccatgatcttgctcaatcaatagtg 25293868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 8187203 - 8187165
Alignment:
Q  173 tttcaagatgcatgatcttgtccatgatcttgctcaatc 211  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  8187203 tttcaagatgcatgatcttgtacatgatcttgctcaatc 8187165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 30206821 - 30206652
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    ||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||     
T  30206821 tggctaatgaatttattttatctagggaaaatatggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatctttctttcaagacat 30206722  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatca 212  Q
    | ||||| |      ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30206721 caagatggacaacggttctggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatca 30206652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 29872473 - 29872294
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    ||||||||| |||||||||||||| ||  |||||||| |||||||||||||| | |||||||||||| ||||||| |||||||||||| |||||||        
T  29872473 tggctaatgaatttatttcatctatgggtaatttggacgttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattctttcaagatgg 29872374  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcaatagtggggc 222  Q
    | ||||| ||| | |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  29872373 caagatggatgaatattctggagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatcaataatggggc 29872294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 43 - 212
Target Start/End: Complemental strand, 30436115 - 30435946
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    ||||||||| |||||||||||||| ||  |||||||| |||||||||||||| |  ||||||||||| ||||||| |||||||||||| |||||||  |     
T  30436115 tggctaatgaatttatttcatctatgggtaatttggacgttgaagatgttggaaaaatggtttggaaggaattgtaccaaaaatcattctttcaagatag 30436016  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatca 212  Q
    | ||||| ||| | |||  ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30436015 caagatggatgaatattttggagacatttctttcaagatgcatgatcttgtccatgatctcgctcaatca 30435946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 29853610 - 29853431
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    |||||||||||||||||||||||| ||  |||||||| |||||||||||||| |  ||||||||||| ||||||| |||||| ||||| |||||||  |     
T  29853610 tggctaatggatttatttcatctaagggtaatttggacgttgaagatgttggaaatatggtttggaaggaattgtaccaaaagtcattctttcaagatat 29853511  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcaatagtggggc 222  Q
    | ||||| ||| | | || |||||||||| |||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  29853510 caagatggatgaatactctggagacatttttttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggc 29853431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 30242214 - 30242358
Alignment:
Q  78 gaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcacctagatgaatgcaaattcgggagacatttctttca 177  Q
    ||||||||||||||||| | |||||||||||| ||||||| |||||||||||| ||||||| || | | ||| ||| | |||| ||||||||||||||||    
T  30242214 gaggttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattttttcaagacagcaaaatggatgaatattctggagacatttctttca 30242313  T
Q  178 agatgcatgatcttgtccatgatcttgctcaatcaatagtggggc 222  Q
    ||||||||||||||||||||||||| ||||||||| || ||||||    
T  30242314 agatgcatgatcttgtccatgatctcgctcaatcagtaatggggc 30242358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 30749942 - 30749763
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||| |||||||||| |||||||||  ||||||||||| |||||||  |     
T  30749942 tggctaatggattgatttcatctaggggtaatatggaggttgaagatgttggcatcatggtttgggatgaattgtatcaaaaatcattctttcaagatag 30749843  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcaatagtggggc 222  Q
      | ||| ||| |  ||| || |||||||| |||||||| |||||||||||||||||||||||||||||| || ||||||    
T  30749842 aaaaatggatgaattttctggcgacatttcattcaagattcatgatcttgtccatgatcttgctcaatcagtaatggggc 30749763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 212
Target Start/End: Original strand, 30713232 - 30713401
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    |||||||||||||||||||||||| ||  |||||||| |||||||||||||| | |||||||||||| ||||||| |||||||||||| || ||||        
T  30713232 tggctaatggatttatttcatctatgggtaatttggacgttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattcttccaagattg 30713331  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatca 212  Q
    | ||||| ||| | |||| ||| |||||||||| || ||||||||||||||||||||||| |||||||||    
T  30713332 caagatggatgaatattctggaaacatttcttttaaaatgcatgatcttgtccatgatctcgctcaatca 30713401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 46 - 210
Target Start/End: Original strand, 30676978 - 30677142
Alignment:
Q  46 ctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcaccta 145  Q
    ||||||||||||||||||||| ||  |||||||| ||||| |||||||| | || ||||||||| ||||||| |||||||||||| |||||||  |   |    
T  30676978 ctaatggatttatttcatctatgggtaatttggacgttgatgatgttggaaacacggtttggaaggaattgtaccaaaaatcattctttcaagatagaaa 30677077  T
Q  146 gatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaat 210  Q
    |||| ||| | |||| |||||||||||||| |||||||||||||||||||||||||| |||||||    
T  30677078 gatggatgaatattctggagacatttcttttaagatgcatgatcttgtccatgatctcgctcaat 30677142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 30338358 - 30338508
Alignment:
Q  72 aatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcacctagatgaatgcaaattcgggagacattt 171  Q
    ||||| ||||||||||||||||| | |||||||||||| ||||||| | ||||||| || |||||||  | | ||||| ||| | |||| ||||||||||    
T  30338358 aatttagaggttgaagatgttggaaacatggtttggaaggaattgtacaaaaaatcgttctttcaagatagcaagatggatgaatattctggagacattt 30338457  T
Q  172 ctttcaagatgcatgatcttgtccatgatcttgctcaatcaatagtggggc 222  Q
    ||||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  30338458 ctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggc 30338508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 30060668 - 30060489
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    ||||||||||||| |||||||||||||  | |  |||||||||||||||||||| |||||| ||| ||||||||| |||||||||||| |||||||  |     
T  30060668 tggctaatggattgatttcatctaggggtactacggaggttgaagatgttggcatcatggtgtgggatgaattgtaccaaaaatcattctttcaagatag 30060569  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcaatagtggggc 222  Q
      | ||| ||| |  ||| || |||||||| |||||||||||||| |||||||||||||||||||||||| || ||||||    
T  30060568 aaaaatggatgaattttctggcgacatttcattcaagatgcatgaccttgtccatgatcttgctcaatcagtaatggggc 30060489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 30483674 - 30483524
Alignment:
Q  72 aatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcacctagatgaatgcaaattcgggagacattt 171  Q
    ||||| ||||||||||||||||| | |||||||||||| ||||||| |  |||||| || |||||||  | | ||||| ||| | |||| ||||||||||    
T  30483674 aatttagaggttgaagatgttggaaacatggtttggaaggaattgtacagaaaatcgttctttcaagatagcaagatggatgaatattctggagacattt 30483575  T
Q  172 ctttcaagatgcatgatcttgtccatgatcttgctcaatcaatagtggggc 222  Q
    ||||||||||||||||||||||||||||||| ||||||||| || ||||||    
T  30483574 ctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggc 30483524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 43 - 202
Target Start/End: Complemental strand, 30400373 - 30400214
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    ||||||||||||| ||||||||| |||  |||  |||||||||||||||||||| |||||||||| ||||||||| |||||||||||| ||||||| ||     
T  30400373 tggctaatggattgatttcatcttggggtaatacggaggttgaagatgttggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagacaa 30400274  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatct 202  Q
      | ||| ||| |  ||| ||  ||||||| |||||||||||||||||||||||||||||    
T  30400273 aaaaatggatgaattttctggcaacatttcattcaagatgcatgatcttgtccatgatct 30400214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 30521440 - 30521603
Alignment:
Q  51 ggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcacctagatga 150  Q
    |||||||| ||||| ||||||||||| ||||| ||||||||||| |  ||| |||||||||||||||||||||| ||||| || ||||  | | |||||     
T  30521440 ggatttatatcatcaagggaaaatttagaggtagaagatgttggaaatatgatttggaatgaattgtgccaaaagtcatttttccaagaaatcaagatgg 30521539  T
Q  151 atgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcaat 214  Q
      |   |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30521540 tcgatgattcaggaggcatttctttcaagttgcatgatcttgtccatgatcttgctcaatcaat 30521603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 214
Target Start/End: Original strand, 30561780 - 30561943
Alignment:
Q  51 ggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcacctagatga 150  Q
    |||||||| ||||| ||||||||||| ||||| ||||||||||| |  ||| |||||||||||||||||||||| ||||| || ||||  | | |||||     
T  30561780 ggatttatatcatcaagggaaaatttagaggtagaagatgttggaaatatgatttggaatgaattgtgccaaaagtcatttttccaagaaatcaagatgg 30561879  T
Q  151 atgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcaat 214  Q
      |   |||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  30561880 tcgatgattcaggaggcatttctttcaagttgcatgatcttgtccatgatcttgctcaatcaat 30561943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 17983206 - 17983027
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    ||||||||  |||||| ||||||||  ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||| || ||||||| ||     
T  17983206 tggctaataaatttatctcatctagaaaaaatttggaggttgaagatgttggcaacatgatttggaatgaattgtaccaaaaatctttctttcaagacat 17983107  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcaatagtggggc 222  Q
    | | ||  |||   ||||  | |  ||||||||||| ||||| ||||| ||||||||||||||||||||| ||| |||||    
T  17983106 ccatattgatgattattcaagtgtgatttctttcaaaatgcacgatctcgtccatgatcttgctcaatcagtagcggggc 17983027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 43 - 215
Target Start/End: Original strand, 30330938 - 30331110
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    ||||| ||||||||||||||||||||   |||||||||||   ||||||||  ||||||| |||||||| ||||||||||||| |||| ||| ||| ||     
T  30330938 tggctgatggatttatttcatctaggcgtaatttggaggtcctagatgttgctagcatggcttggaatggattgtgccaaaaaccattctttgaagacat 30331037  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcaata 215  Q
    | ||||  ||| | ||||   |||||||||||| |||| || ||||||| || ||||||||||||||||||||    
T  30331038 caagatctatgaatattctaaagacatttctttaaagacgcgtgatcttttcaatgatcttgctcaatcaata 30331110  T

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Target: chr5; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 30475614 - 30475505
Alignment:
Q  103 tttggaatgaattgtgccaaaaatcattatttcaaggcacctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatct 202  Q
    ||||||| ||| |||||||||||||||| || |||| || | ||||  |||   |||| ||||||||| |||||||||||||||| || || ||||||||    
T  30475614 tttggaaggaactgtgccaaaaatcattcttccaagacatcaagatagatgattattcaggagacattactttcaagatgcatgacctagtgcatgatct 30475515  T
Q  203 tgctcaatca 212  Q
    ||||||||||    
T  30475514 tgctcaatca 30475505  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 15347103 - 15347065
Alignment:
Q  173 tttcaagatgcatgatcttgtccatgatcttgctcaatc 211  Q
    ||||| ||||||||||||||| |||||||||||||||||    
T  15347103 tttcacgatgcatgatcttgttcatgatcttgctcaatc 15347065  T

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Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 211
Target Start/End: Complemental strand, 17927693 - 17927655
Alignment:
Q  173 tttcaagatgcatgatcttgtccatgatcttgctcaatc 211  Q
    |||||| |||||||||||||| |||||||||||||||||    
T  17927693 tttcaaaatgcatgatcttgttcatgatcttgctcaatc 17927655  T

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Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 15083051 - 15083010
Alignment:
Q  173 tttcaagatgcatgatcttgtccatgatcttgctcaatcaat 214  Q
    |||||||||||| |||||||| || |||||||||||||||||    
T  15083051 tttcaagatgcacgatcttgttcacgatcttgctcaatcaat 15083010  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 15335733 - 15335696
Alignment:
Q  173 tttcaagatgcatgatcttgtccatgatcttgctcaat 210  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  15335733 tttcaaaatgcatgatcttgttcatgatcttgctcaat 15335696  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 15357374 - 15357342
Alignment:
Q  171 tctttcaagatgcatgatcttgtccatgatctt 203  Q
    ||||||||||||||||||||||| |||||||||    
T  15357374 tctttcaagatgcatgatcttgttcatgatctt 15357342  T

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Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 16396769 - 16396737
Alignment:
Q  174 ttcaagatgcatgatcttgtccatgatcttgct 206  Q
    |||||||||||||||||||| ||||||||||||    
T  16396769 ttcaagatgcatgatcttgttcatgatcttgct 16396737  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 6 - 222
Target Start/End: Complemental strand, 7099763 - 7099541
Alignment:
Q  6 aaagatacaaaaatcgataaggaagaattgactcatct------ggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagca 99  Q
    |||||||||||||||   ||||||||||||| ||||||      ||||||||||||||||||||||||  ||||||||||||||||||||||||| | ||    
T  7099763 aaagatacaaaaatcatgaaggaagaattgattcatctttggatggctaatggatttatttcatctagaaaaaatttggaggttgaagatgttggaaaca 7099664  T
Q  100 tggtttggaatgaattgtgccaaaaatcattatttcaaggcacctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatga 199  Q
    || ||||||||||||||| ||||||||| || ||||||| || | | ||| |||   ||||  |||  ||||||||||| ||||||||||| ||||||||    
T  7099663 tgatttggaatgaattgtaccaaaaatctttctttcaagacatccatatggatgattattcaagagtgatttctttcaaaatgcatgatctcgtccatga 7099564  T
Q  200 tcttgctcaatcaatagtggggc 222  Q
    ||||||||||||| ||| |||||    
T  7099563 tcttgctcaatcagtaggggggc 7099541  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 7581478 - 7581702
Alignment:
Q  1 ttccaaaagatacaaaaatcgataaggaagaattgactcatct------ggctaatggatttatttcatctagggaaaatttggaggttgaagatgttgg 94  Q
    |||| |||||||||||||||   ||||||||||||| ||||||      |||||||| |||||||||||||||  |||||||||||||||||||||||||    
T  7581478 ttcctaaagatacaaaaatcatgaaggaagaattgattcatctttggatggctaatgaatttatttcatctagaaaaaatttggaggttgaagatgttgg 7581577  T
Q  95 cagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcacctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtc 194  Q
    || |||| |||||||||||||||||||||| || || ||||||| ||   | ||| |||   ||||  |||||||||||||||| |||||||||||  ||    
T  7581578 caacatgatttggaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagacatttctttcaaaatgcatgatctcatc 7581677  T
Q  195 catgatcttgctcaatcaatagtgg 219  Q
    ||||||||||||| |||| ||||||    
T  7581678 catgatcttgctcgatcagtagtgg 7581702  T

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Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 43 - 222
Target Start/End: Complemental strand, 52352258 - 52352078
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaa-gatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggca 141  Q
    |||| |||||||||||||| |||| ||||||||||||||| ||| || |||||||  ||| ||||||||||||||| |||||| ||||| ||||||| ||    
T  52352258 tggccaatggatttatttcgtctaaggaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagaca 52352159  T
Q  142 cctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcaatagtggggc 222  Q
     | |||| ||||   |||  |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  52352158 tcaagatcaatgattatttaggagacatttctttcaagatgcatgatcttgtacatgatcttgctcaatcaattgtggggc 52352078  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 202
Target Start/End: Original strand, 20296389 - 20296548
Alignment:
Q  43 tggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcac 142  Q
    ||||||||||||| |||||||||| ||  |||||||| |||||||||||||| | |||||||||||| ||||||| |||||||||||| |||||||  |     
T  20296389 tggctaatggattaatttcatctatgggtaatttggacgttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattctttcaagaaat 20296488  T
Q  143 ctagatgaatgcaaattcgggagacatttctttcaagatgcatgatcttgtccatgatct 202  Q
    | | ||  ||| | ||||  |||| |||| |||||||||||||||||||||  |||||||    
T  20296489 caaaatagatgaatattctagagatatttatttcaagatgcatgatcttgtttatgatct 20296548  T

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Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13616944 - 13616801
Alignment:
Q  1 ttccaaaagatacaaaaatcgataaggaagaattgactcatct------ggctaatggatttatttcatctagggaaaatttggaggttgaagatgttgg 94  Q
    |||| |||||||||||||||   ||||||||||||| ||||||      |||||||| ||||||||||| ||   |||| ||||||||||||||||||||    
T  13616944 ttcctaaagatacaaaaatcacaaaggaagaattgattcatctttggatggctaatgaatttatttcatgtaaaaaaaaattggaggttgaagatgttgg 13616845  T
Q  95 cagcatggtttggaatgaattgtgccaaaaatcattatttcaag 138  Q
     | |||| ||||||||||||||| ||||||||| || |||||||    
T  13616844 aaacatgatttggaatgaattgtaccaaaaatctttttttcaag 13616801  T

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Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 72 - 212
Target Start/End: Complemental strand, 26707605 - 26707465
Alignment:
Q  72 aatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattatttcaaggcacctagatgaatgcaaattcgggagacattt 171  Q
    ||||| ||||||||||||||||| | |||||||||||| ||||||| |||||||||||| ||||||| |    |||||  || | |||| ||||||||||    
T  26707605 aatttagaggttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattctttcaagactgtaagatgggtgaatattctggagacattt 26707506  T
Q  172 ctttcaagatgcatgatcttgtccatgatcttgctcaatca 212  Q
    |||||||||||||||||||| |||||||||| |||||||||    
T  26707505 ctttcaagatgcatgatcttatccatgatctcgctcaatca 26707465  T

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