View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_46 (Length: 239)
Name: NF21513_low_46
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 21053972 - 21054179
Alignment:
| Q |
14 |
gaagcaatctctctttataagaacattcctcagtttaactgtgtgaattggacacaatctttcaatacccttttggagataatggtgaatgagaataagc |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21053972 |
gaagcaatctctctttataagaacattcctcagtttaactgcgtgaattggacacaatctttcaatacccttttggagataatggtgaatgagaataagc |
21054071 |
T |
|
| Q |
114 |
ttgaagatgctcatagtctttttgttgagagttcatgtggttgggaagtgaagtcacgtgttcaggcgttgaatttgcttatgtatgctttgtgccggaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
21054072 |
ttgaagatgctcatagtctttttgttgagagttcttgcggttgggaagtgaagtcacgcgttcaggcgttgaatttgcttatgtatgctttgtgccggaa |
21054171 |
T |
|
| Q |
214 |
gattcgat |
221 |
Q |
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|| ||||| |
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| T |
21054172 |
gagtcgat |
21054179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 26367949 - 26367742
Alignment:
| Q |
14 |
gaagcaatctctctttataagaacattcctcagtttaactgtgtgaattggacacaatctttcaatacccttttggagataatggtgaatgagaataagc |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
26367949 |
gaagcaatctctctttataagaacattcctcagtttaactgtgtgaattggactcaatctttcaatactcttttgaagataatggtgaatgagaataagc |
26367850 |
T |
|
| Q |
114 |
ttgaagatgctcatagtctttttgttgagagttcatgtggttgggaagtgaagtcacgtgttcaggcgttgaatttgcttatgtatgctttgtgccggaa |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| |||||||| |
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| T |
26367849 |
ttgaagatgctcatagtctttttgttgagagttcatgtggttgggaagtgaagtctcgcgttcaggcgttgaacttgcttatgtatgctttatgccggaa |
26367750 |
T |
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| Q |
214 |
gattcgat |
221 |
Q |
| |
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|| ||||| |
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| T |
26367749 |
gagtcgat |
26367742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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