View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21513_low_48 (Length: 230)
Name: NF21513_low_48
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 40772630 - 40772478
Alignment:
| Q |
17 |
gaagaaatggttgaatgtaaaacaaaaggtgtatgattttagtgaagatgaagctaacactgaaactgatgaaagtgaagatgatggtatgtatgtgctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40772630 |
gaagaaatggttgaatgtaaaacaaaaggtgtatgattttagtgaagatgaagctaacactgaaactgatgaaagtgaagatgatggtatgtatgtgctt |
40772531 |
T |
|
| Q |
117 |
cattatttactatatattannnnnnnnccttccttttatttgttcatttaattg |
170 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
40772530 |
cattatttactatatatca-tttttttccttccttttatttgttcatttaattg |
40772478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 108
Target Start/End: Complemental strand, 40779783 - 40779695
Alignment:
| Q |
17 |
gaagaaatggttgaatgtaaaacaaaaggtgtatgattttagtgaagatgaagctaacactgaaactgatgaaagtgaagatgatggtatgt |
108 |
Q |
| |
|
|||||||||| ||||| |||| |||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||| |
|
|
| T |
40779783 |
gaagaaatggctgaatataaagcaaaaggtttatgattttagtgaagatgaagctgacactgaaac---tgagagtgaagatgatggtatgt |
40779695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 4676721 - 4676782
Alignment:
| Q |
42 |
aaggtgtatgattttagtgaagatgaagctaacactgaaactgatgaaagtgaagatgatggtat |
106 |
Q |
| |
|
|||||| ||||||||||||||||||||| | | |||||||| ||| ||||||||||||||||| |
|
|
| T |
4676721 |
aaggtgaatgattttagtgaagatgaagttgatactgaaac---tgagagtgaagatgatggtat |
4676782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University