View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_49 (Length: 227)
Name: NF21513_low_49
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 6453461 - 6453243
Alignment:
| Q |
1 |
tctgcccaagtttttaggtagcaactcaaaactttttgccccttgttcaagagtgtattctacgaggattgaacattgaccttacttcctaagttgaacc |
100 |
Q |
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| T |
6453461 |
tctgcccaagtgcttaggtagcaactcaaaactttttgccccttgttcaagagtgtattctacgaggattgaacattgaccttacttcctaagttgaacc |
6453362 |
T |
|
| Q |
101 |
cgttgcttaaccaactgatacatactcatttcatatcgaagattaatttgaatgactttnnnnnnnnntataatgtacattttttatatagtaaaggcct |
200 |
Q |
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| T |
6453361 |
cgttgcttaacgaactgagccatactcatttcatatcgaagattaa-tagaataactttaagaaaaaa-ataatatacattttttaaatattaaaggcct |
6453264 |
T |
|
| Q |
201 |
aaatataggagttttatttat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
6453263 |
aaatataggagttttatttat |
6453243 |
T |
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