View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_5 (Length: 587)
Name: NF21513_low_5
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 8925701 - 8926065
Alignment:
| Q |
1 |
tattttgaaatgataaaaatcacataaaataaattaatataagcaaaactaaatccagtcatttataggcatcaaatatatgtaagaattattttatttt |
100 |
Q |
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| T |
8925701 |
tattttgaaatgataaaaatcacataaaataaattaatataagcaaaacaaaatccagtcatttataggcatcaaatatatgtaagaattattttatttt |
8925800 |
T |
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| Q |
101 |
atactaagtcaattcatttgcatttgttttatgttttgtattactatattagtctattaatttgtaagaattatcctcttgatgcatatatacacattag |
200 |
Q |
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| T |
8925801 |
atactaaatcaattcatttgcatttgttttatgttttgtattactatattagtctattaatttgtaagaattatcctcttgatgcatatatacacattag |
8925900 |
T |
|
| Q |
201 |
aatttgtgacaataatacaatacttttgttaattaaataaatagtttttccattcttaaccattccttcaagttggatgcctataaatacattacattgc |
300 |
Q |
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| T |
8925901 |
aatttgtgacaataatacaatacttttgttaattaaataaatagtttttccattcttaaccattccttcaagttggatgcctataaatacattacattgc |
8926000 |
T |
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| Q |
301 |
accttaagaatcgcactcctcacagcatatactctctcattcatatatagctgaatattgaagtgag |
367 |
Q |
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| T |
8926001 |
accttaagaatcgcactcctcacagcatata--ctctcattcacatatagctgaatattgaagtgag |
8926065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 415 - 572
Target Start/End: Original strand, 8926113 - 8926278
Alignment:
| Q |
415 |
ctttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggtg |
514 |
Q |
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| T |
8926113 |
ctttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggta |
8926212 |
T |
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| Q |
515 |
ctagttctatacatcatcaaaatttctct--------gtgcatgtttagattaacggtgaacttga |
572 |
Q |
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| T |
8926213 |
ctagttctatacatcatcaaaatttctctttaatacagtgcatgtttagattaacggtgaacttga |
8926278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 416 - 513
Target Start/End: Original strand, 55522713 - 55522810
Alignment:
| Q |
416 |
tttccagttgttgacatggggaagcttaacacagaagagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt |
513 |
Q |
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| T |
55522713 |
tttccagtagttgacatgaagaatcttaacactgaagagaaagcatcaaccatggagatcataaaagatgcttgtgaaaattggggtttctttgaggt |
55522810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 452 - 513
Target Start/End: Original strand, 37628696 - 37628757
Alignment:
| Q |
452 |
gagagaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt |
513 |
Q |
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| T |
37628696 |
gagagaaaagctactatggagaaaatcaaggatgcttgtgaaaactggggattctttgaggt |
37628757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 455 - 513
Target Start/End: Complemental strand, 36872765 - 36872707
Alignment:
| Q |
455 |
agaaaagctaccatggagatgatcaaagatgcttgtgagaactggggcttctttgaggt |
513 |
Q |
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| T |
36872765 |
agaaaagataccatggagaaaattaaggatgcttgtgagaattggggattctttgaggt |
36872707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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