View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21513_low_50 (Length: 211)

Name: NF21513_low_50
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21513_low_50
NF21513_low_50
[»] chr1 (5 HSPs)
chr1 (51-180)||(6557223-6557352)
chr1 (106-145)||(29230065-29230104)
chr1 (90-147)||(26462649-26462706)
chr1 (95-144)||(31667426-31667475)
chr1 (107-135)||(26307093-26307121)
[»] chr7 (2 HSPs)
chr7 (96-162)||(18750859-18750925)
chr7 (108-165)||(12843056-12843113)
[»] chr2 (3 HSPs)
chr2 (106-164)||(40170197-40170255)
chr2 (106-159)||(32843699-32843752)
chr2 (106-158)||(37497107-37497159)
[»] chr3 (10 HSPs)
chr3 (106-145)||(31207839-31207878)
chr3 (106-145)||(32166203-32166242)
chr3 (95-146)||(1502573-1502624)
chr3 (106-145)||(21110483-21110522)
chr3 (106-144)||(8903584-8903622)
chr3 (95-137)||(19730218-19730260)
chr3 (95-137)||(19750808-19750850)
chr3 (95-145)||(28576716-28576766)
chr3 (97-158)||(49636837-49636898)
chr3 (95-147)||(19323457-19323509)
[»] chr4 (7 HSPs)
chr4 (97-143)||(8457927-8457973)
chr4 (95-144)||(9988708-9988757)
chr4 (95-161)||(679997-680063)
chr4 (107-145)||(5109977-5110015)
chr4 (95-132)||(683065-683102)
chr4 (106-139)||(2976700-2976733)
chr4 (106-147)||(5654611-5654652)
[»] chr6 (3 HSPs)
chr6 (95-140)||(18803252-18803297)
chr6 (109-161)||(30781756-30781808)
chr6 (106-159)||(10760862-10760914)
[»] chr8 (2 HSPs)
chr8 (55-101)||(29519273-29519319)
chr8 (95-147)||(31548302-31548354)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 9e-63; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 51 - 180
Target Start/End: Original strand, 6557223 - 6557352
Alignment:
Q  51 gtgcagcaccgacacttctgatcaaaagcatatctggtgtccggcacatgtcataacattcaattatgtcattttctcaaataattaccagtgtcgatga 150  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6557223 gtgcagcaccgacacttctgatcaaaagcatatccggtgtccggcacatgtcataacattcaattatgtcattttctcaaataattaccagtgtcgatga 6557322  T
Q  151 gtcagtgtcgtatccagtgtcagtgcttca 180  Q
    ||||||||||||||| ||||||||||||||    
T  6557323 gtcagtgtcgtatccggtgtcagtgcttca 6557352  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 29230104 - 29230065
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgtc 145  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  29230104 acattcaattatgtcattttctcaaattattaccggtgtc 29230065  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 26462649 - 26462706
Alignment:
Q  90 tccggcacatgtcataacattcaattatgtcattttctcaaataattaccagtgtcga 147  Q
    |||| ||||||| || |||||||||||| ||||||||| |||| |||| |||||||||    
T  26462649 tccgacacatgtgattacattcaattatttcattttcttaaattattatcagtgtcga 26462706  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 31667475 - 31667426
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataattaccagtgt 144  Q
    ||||||| || ||||| |||||||||||||||| |||| |||||||||||    
T  31667475 cacatgtgattacatttaattatgtcattttctaaaattattaccagtgt 31667426  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 135
Target Start/End: Original strand, 26307093 - 26307121
Alignment:
Q  107 cattcaattatgtcattttctcaaataat 135  Q
    |||||||||||||||||||||||||||||    
T  26307093 cattcaattatgtcattttctcaaataat 26307121  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 162
Target Start/End: Complemental strand, 18750925 - 18750859
Alignment:
Q  96 acatgtcataacattcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgtcgta 162  Q
    |||||| || |||||||||||||||||||||| |||| ||||||  |||||||| ||||||||||||    
T  18750925 acatgtgattacattcaattatgtcattttcttaaattattaccgttgtcgatgtgtcagtgtcgta 18750859  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 12843056 - 12843113
Alignment:
Q  108 attcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgtcgtatcc 165  Q
    ||||||||||||||||||||||||| | |||| || | || | |||||||||||||||    
T  12843056 attcaattatgtcattttctcaaattaataccggtcttgacgtgtcagtgtcgtatcc 12843113  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 40170197 - 40170255
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgtcgtatc 164  Q
    |||||||||||| |||||||| ||||| ||||||| |||||||||||||||||| ||||    
T  40170197 acattcaattatatcattttcacaaattattaccaatgtcgatgagtcagtgtcatatc 40170255  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 159
Target Start/End: Complemental strand, 32843752 - 32843699
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgtc 159  Q
    |||||||||||||||||||||||| || | ||||||| |||||| |||| ||||    
T  32843752 acattcaattatgtcattttctcatattactaccagtatcgatgtgtcattgtc 32843699  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 37497159 - 37497107
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgt 158  Q
    ||||| |||| || ||||||||||||| |||| ||||||||||| ||||||||    
T  37497159 acattgaattgtggcattttctcaaattattatcagtgtcgatgtgtcagtgt 37497107  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Complemental strand, 31207878 - 31207839
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgtc 145  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  31207878 acattcaattatgtcattttctcaaataattaccattgtc 31207839  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 32166203 - 32166242
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgtc 145  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  32166203 acattcaattatgtcattttctcaaattattaccagtgtc 32166242  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 1502624 - 1502573
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataattaccagtgtcg 146  Q
    ||||||| || |||||||||||||||||||||| | || |||||||||||||    
T  1502624 cacatgtgattacattcaattatgtcattttcttagattattaccagtgtcg 1502573  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 21110483 - 21110522
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgtc 145  Q
    ||||||||||||||||||||||||||| ||||| ||||||    
T  21110483 acattcaattatgtcattttctcaaattattacgagtgtc 21110522  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 8903622 - 8903584
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgt 144  Q
    |||||||||||||||||||||||| ||||||||| ||||    
T  8903622 acattcaattatgtcattttctcagataattaccggtgt 8903584  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 19730218 - 19730260
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataatta 137  Q
    ||||||| || ||||||||||||||||||||||||||| ||||    
T  19730218 cacatgtgatcacattcaattatgtcattttctcaaattatta 19730260  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 137
Target Start/End: Original strand, 19750808 - 19750850
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataatta 137  Q
    ||||||| || ||||||||||||||||||||||||||| ||||    
T  19750808 cacatgtgatcacattcaattatgtcattttctcaaattatta 19750850  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 28576766 - 28576716
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataattaccagtgtc 145  Q
    ||||||| || |||||||||| |||||||||||||||| |||||| |||||    
T  28576766 cacatgtaattacattcaattttgtcattttctcaaattattaccggtgtc 28576716  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 49636837 - 49636898
Alignment:
Q  97 catgtcataacattcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgt 158  Q
    ||||| || |||||||||||  |||||||||||||| |||||||| ||||||  ||||||||    
T  49636837 catgtgattacattcaattaattcattttctcaaattattaccagagtcgatctgtcagtgt 49636898  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 19323457 - 19323509
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataattaccagtgtcga 147  Q
    ||||||| || | ||||||||||||||||||||||||| | || |||||||||    
T  19323457 cacatgtgattaaattcaattatgtcattttctcaaattactatcagtgtcga 19323509  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 8457973 - 8457927
Alignment:
Q  97 catgtcataacattcaattatgtcattttctcaaataattaccagtg 143  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||    
T  8457973 catgtgattacattcaattatgtcattttctcaaattattaccagtg 8457927  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 9988708 - 9988757
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataattaccagtgt 144  Q
    ||||||| || ||||||||||||||||||||||||||||| |||| ||||    
T  9988708 cacatgtgattacattcaattatgtcattttctcaaataactacctgtgt 9988757  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 679997 - 680063
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgtcgt 161  Q
    |||||||||| ||||| ||||||||  |||||||||||||||||  ||| ||| | |||||||||||    
T  679997 cacatgtcattacattgaattatgtttttttctcaaataattactggtgccgacgtgtcagtgtcgt 680063  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 145
Target Start/End: Original strand, 5109977 - 5110015
Alignment:
Q  107 cattcaattatgtcattttctcaaataattaccagtgtc 145  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  5109977 catttaattatgtcattttttcaaataattaccagtgtc 5110015  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 132
Target Start/End: Complemental strand, 683102 - 683065
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaat 132  Q
    ||||||| || |||||||||||||||||||||||||||    
T  683102 cacatgtgattacattcaattatgtcattttctcaaat 683065  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 2976733 - 2976700
Alignment:
Q  106 acattcaattatgtcattttctcaaataattacc 139  Q
    ||||||||||||||||||||||||||| ||||||    
T  2976733 acattcaattatgtcattttctcaaattattacc 2976700  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 5654611 - 5654652
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgtcga 147  Q
    ||||| ||||||||||||||||||||| |||| |||||||||    
T  5654611 acattgaattatgtcattttctcaaattattatcagtgtcga 5654652  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 95 - 140
Target Start/End: Complemental strand, 18803297 - 18803252
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataattacca 140  Q
    ||||||| || |||||||||||||| ||||||||||||||||||||    
T  18803297 cacatgtgattacattcaattatgtaattttctcaaataattacca 18803252  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 30781756 - 30781808
Alignment:
Q  109 ttcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgtcgt 161  Q
    |||||||||||  ||||||||||||||||||| |||||||| |||| ||||||    
T  30781756 ttcaattatgtagttttctcaaataattaccaatgtcgatgtgtcattgtcgt 30781808  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 159
Target Start/End: Original strand, 10760862 - 10760914
Alignment:
Q  106 acattcaattatgtcattttctcaaataattaccagtgtcgatgagtcagtgtc 159  Q
    ||||||||| ||||||||||||||||| |||| ||||||||| | |||||||||    
T  10760862 acattcaat-atgtcattttctcaaattattatcagtgtcgacgtgtcagtgtc 10760914  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 29519319 - 29519273
Alignment:
Q  55 agcaccgacacttctgatcaaaagcatatctggtgtccggcacatgt 101  Q
    ||||||||||||||| |||||| |||| ||||||||||| |||||||    
T  29519319 agcaccgacacttctaatcaaaggcatgtctggtgtccgacacatgt 29519273  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 31548302 - 31548354
Alignment:
Q  95 cacatgtcataacattcaattatgtcattttctcaaataattaccagtgtcga 147  Q
    ||||||| || ||||| |||||||||||||| ||||||||||| | |||||||    
T  31548302 cacatgtgattacattgaattatgtcattttatcaaataattatcggtgtcga 31548354  T

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