View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21513_low_6 (Length: 584)
Name: NF21513_low_6
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21513_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 16 - 565
Target Start/End: Complemental strand, 44068407 - 44067858
Alignment:
| Q |
16 |
atggctagtatgagtagaaatggcaagtaaactaggccattggcaatagcataagatgaaactctgtagcttccacttgaagtctccttcattagaatct |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44068407 |
atggctagtatgagtagaaatggcaagtaaactaggccattggcaatagcataagatgaaactctgtagcttccacttgaagtctccttcattagaatct |
44068308 |
T |
|
| Q |
116 |
ccctttcttgtagaaaaatcggtagagcttcaatggcactcgataacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgctcccactag |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44068307 |
ccctttcttgtagaaaaatcggtagagcttcaatggcactcgataacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgctcccacgag |
44068208 |
T |
|
| Q |
216 |
accatctttgagattaccaaagatggatcctaaaaccagccctgaaatcagcatctgaatagtcctaaatgcaaagagctcctttgtacggaaaatattt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44068207 |
accatctttgagattaccaaagatggatcctaaaaccagccctgaaatcagcatctgaatagtcctaaatgcaaagagctcctttgtacggaaaatattt |
44068108 |
T |
|
| Q |
316 |
tttgagaacctatgagctagaatcatagtttctctcaatctagaattcgcataatcactagtgaaatccattcctacattcatgttttctatgtcaaata |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44068107 |
tttgagaacctatgagctagaatcatagtttctctcaatctagaattcgcataatcactagtgaaatccattcctacattcatgttttctatgtcaaata |
44068008 |
T |
|
| Q |
416 |
ccttggattgttgaaatagctgttgcagagtaaacttaccgcttctactttcaccttgatcattgcctttctttagtagcattgtccctagtaatcgttt |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
44068007 |
ccttggattgttgaaatagctgttgcagagtaaacttaccgcttctactttcaccttgatcattgcctttctttagtagcattgtcccttgtaatcgttt |
44067908 |
T |
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| Q |
516 |
cggtggttcgatcagaacttgctgactcttttgttgttcctgaatagtct |
565 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44067907 |
cggtggttcgatctgaacttgctgactcttttgttgttcctgaatagtct |
44067858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 165; Significance: 6e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 16 - 372
Target Start/End: Complemental strand, 39264689 - 39264333
Alignment:
| Q |
16 |
atggctagtatgagtagaaatggcaagtaaactaggccattggcaatagcataagatgaaactctgtagcttccacttgaagtctccttcattagaatct |
115 |
Q |
| |
|
|||||||| || || ||||||||||||||||||| |||||| ||||||||||||||||| || | ||||||||||| || || |||||||| ||||| | |
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| T |
39264689 |
atggctaggattagaagaaatggcaagtaaactaagccatttgcaatagcataagatgatacgcggtagcttccacaagatgtttccttcatgagaattt |
39264590 |
T |
|
| Q |
116 |
ccctttcttgtagaaaaatcggtagagcttcaatggcactcgataacaaaaacgttaaaatgaaagcaaatagaccaaccctttgttctgctcccactag |
215 |
Q |
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||||||||||||||||||| ||||||||||| ||| || ||||||| ||| ||||| ||||||||||||||||||||||||| || || ||| ||| |
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| T |
39264589 |
ccctttcttgtagaaaaattggtagagcttctatgctgcttgataacagaaaagttaatatgaaagcaaatagaccaaccctttcttgtgttcctcttag |
39264490 |
T |
|
| Q |
216 |
accatctttgagattaccaaagatggatcctaaaaccagccctgaaatcagcatctgaatagtcctaaatgcaaagagctcctttgtacggaaaatattt |
315 |
Q |
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| |||||||||| |||| |||||||||||||||||| || |||||||||||||||||||| ||||| ||||||| ||||| |||||||| || || ||| |
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| T |
39264489 |
atcatctttgaggttacaaaagatggatcctaaaactagtcctgaaatcagcatctgaattgtcctgcatgcaaatagctcttttgtacgaaatatgttt |
39264390 |
T |
|
| Q |
316 |
tttgagaacctatgagctagaatcatagtttctctcaatctagaattcgcataatca |
372 |
Q |
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|| ||||| ||||||| |||||||||||||||||||||||| ||||| ||| ||||| |
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| T |
39264389 |
ttggagaatctatgagttagaatcatagtttctctcaatctggaattagcaaaatca |
39264333 |
T |
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