View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21513_low_9 (Length: 578)

Name: NF21513_low_9
Description: NF21513
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21513_low_9
NF21513_low_9
[»] chr1 (8 HSPs)
chr1 (18-179)||(3144802-3144963)
chr1 (413-578)||(3144156-3144321)
chr1 (319-361)||(21444802-21444844)
chr1 (317-420)||(9443573-9443678)
chr1 (317-362)||(22103828-22103873)
chr1 (321-420)||(42267304-42267405)
chr1 (317-361)||(13245912-13245956)
chr1 (317-369)||(21444648-21444700)
[»] chr2 (4 HSPs)
chr2 (317-418)||(11689544-11689647)
chr2 (317-418)||(11721412-11721515)
chr2 (319-369)||(11689762-11689812)
chr2 (319-369)||(11721247-11721297)
[»] chr4 (4 HSPs)
chr4 (313-369)||(7280424-7280480)
chr4 (319-420)||(11857893-11857996)
chr4 (319-369)||(7280263-7280313)
chr4 (319-361)||(11858113-11858155)
[»] chr8 (5 HSPs)
chr8 (319-420)||(11291028-11291131)
chr8 (319-418)||(22890101-22890201)
chr8 (317-369)||(11291233-11291284)
chr8 (317-361)||(20050145-20050189)
chr8 (317-361)||(24085836-24085880)
[»] scaffold0181 (1 HSPs)
scaffold0181 (319-361)||(9427-9469)
[»] chr3 (2 HSPs)
chr3 (317-361)||(30380908-30380952)
chr3 (319-369)||(14633906-14633956)
[»] chr6 (2 HSPs)
chr6 (319-362)||(33648629-33648672)
chr6 (319-361)||(1215069-1215111)
[»] scaffold0100 (1 HSPs)
scaffold0100 (319-361)||(31082-31124)
[»] chr7 (1 HSPs)
chr7 (319-410)||(15714407-15714499)


Alignment Details
Target: chr1 (Bit Score: 158; Significance: 8e-84; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 3144963 - 3144802
Alignment:
Q  18 gtatcattatcagtttgttagaatcaaggtgaaccaccccgtagcttctgcaaaatcacggttgttcaccgtgattcaagtgataccaaacatgcataga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  3144963 gtatcattatcagtttgttagaatcaaggtgaaccaccccgtagcttctgcaaaatcacggttgttcaccgtgatttaagtgataccaaacatgcataga 3144864  T
Q  118 agaatcaagcggttactagcagtgactcatcaaacaccaaaactatttcggtttatattcag 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144863 agaatcaagcggttactagcagtgactcatcaaacaccaaaactatttcggtttatattcag 3144802  T

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Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 413 - 578
Target Start/End: Original strand, 3144156 - 3144321
Alignment:
Q  413 ataaaagcagtatacaatgtatatttgtagttgtatctatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 512  Q
    |||||||||||||| |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144156 ataaaagcagtatagaatgtatatttgtagttgtatacatgtatgtattgatcgacaaaggcgtcagagggtgggaacgatcatgattaagttggcagag 3144255  T
Q  513 aaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcagagaccacagagtacagacc 578  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3144256 aaagtgtgtttggctcagaatagagaatagaaagaaagaaacagcagagaccacagagtacagacc 3144321  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 21444802 - 21444844
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 361  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  21444802 ttttaagtgattaaattttgacacggcaaaatgccaggattaa 21444844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 420
Target Start/End: Complemental strand, 9443678 - 9443573
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatca-attttaaatgacctctagttttagggactaaacacgtat 414  Q
    |||||||| |||||||||||||  | ||||||||||||||||||| || ||||  || ||  |||||||||||| ||| ||  | ||||||||||| |||    
T  9443678 aattttaaatgattaaattttgggaggacaaaatgccaggattaaggaatacagagaccattttttaaatgacccctatttgcaaggactaaacacatat 9443579  T
Q  415 aaaagc 420  Q
    ||||||    
T  9443578 aaaagc 9443573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 22103828 - 22103873
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaaa 362  Q
    ||||||||||||||||||||||||| | ||||||  ||||||||||    
T  22103828 aattttaagtgattaaattttgacagggcaaaatagcaggattaaa 22103873  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 420
Target Start/End: Complemental strand, 42267405 - 42267304
Alignment:
Q  321 ttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtataaaa 418  Q
    |||| ||||||||||||| || |||||| || |||||||||||| ||||  || ||| |||||||||||| ||| ||  ||||| ||||||| |||||||    
T  42267405 ttaaatgattaaattttggcaggacaaattgtcaggattaaagaatacagggaccaatttttaaatgacccctatttgcagggaataaacacatataaaa 42267306  T
Q  419 gc 420  Q
    ||    
T  42267305 gc 42267304  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 13245956 - 13245912
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaa 361  Q
    |||||||||||||||||||||| || |  ||||||||||||||||    
T  13245956 aattttaagtgattaaattttggcagggtaaaatgccaggattaa 13245912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 369
Target Start/End: Complemental strand, 21444700 - 21444648
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 369  Q
    ||||||||||||||||||||||| | || |||||||||  |||||||| ||||    
T  21444700 aattttaagtgattaaattttgataggataaaatgccaaaattaaagaataca 21444648  T

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Target: chr2 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 317 - 418
Target Start/End: Complemental strand, 11689647 - 11689544
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtat 414  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||| ||||  |||||| |||||||||||| ||| ||  | ||||||||||| |||    
T  11689647 aattttaagtgattaaattttggcaggacaaaatgccgggattaaagaatacagggatcaatttttaaatgacccctatttccaaggactaaacacatat 11689548  T
Q  415 aaaa 418  Q
    ||||    
T  11689547 aaaa 11689544  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 317 - 418
Target Start/End: Original strand, 11721412 - 11721515
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca-cgatcaa-ttttaaatgacctctagttttagggactaaacacgtat 414  Q
    |||||||||||||||||||||| || || |||||| |||||||||||| ||||  |||||| |||||||||||| ||| ||  |  |||||||||| |||    
T  11721412 aattttaagtgattaaattttggcaggataaaatgtcaggattaaagaatacagggatcaatttttaaatgacccctatttccaaagactaaacacatat 11721511  T
Q  415 aaaa 418  Q
    ||||    
T  11721512 aaaa 11721515  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 369
Target Start/End: Original strand, 11689762 - 11689812
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 369  Q
    |||||||||||||||||||| || |||||| ||| ||||||||||| ||||    
T  11689762 ttttaagtgattaaattttggcaggacaaattgctaggattaaagaataca 11689812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 11721297 - 11721247
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 369  Q
    |||||||||||||||||||| || | |||||||| ||||||||||| ||||    
T  11721297 ttttaagtgattaaattttggcagggcaaaatgctaggattaaagaataca 11721247  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 313 - 369
Target Start/End: Original strand, 7280424 - 7280480
Alignment:
Q  313 acataattttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 369  Q
    ||||||||||||||||||||||||||||||| ||||||| ||| |||||||| ||||    
T  7280424 acataattttaagtgattaaattttgacatggcaaaatgtcagaattaaagaataca 7280480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 420
Target Start/End: Complemental strand, 11857996 - 11857893
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatcaa--ttttaaatgacctctagttttagggactaaacacgtataa 416  Q
    |||||||||||||||||||| ||   ||||||||||||||||| || |||| |  | |  |||||||||||||||| ||  ||||||||||||| |||||    
T  11857996 ttttaagtgattaaattttggcagagcaaaatgccaggattaaggaatacagggaccattttttaaatgacctctatttgcagggactaaacacatataa 11857897  T
Q  417 aagc 420  Q
    ||||    
T  11857896 aagc 11857893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 7280313 - 7280263
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 369  Q
    ||||||||||||||||||||||| | ||||||| |||||||||||| ||||    
T  7280313 ttttaagtgattaaattttgacagggcaaaatgacaggattaaagaataca 7280263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 11858113 - 11858155
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 361  Q
    ||||||||||||||||||||||| |  ||||||||||||||||    
T  11858113 ttttaagtgattaaattttgacagggtaaaatgccaggattaa 11858155  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 420
Target Start/End: Complemental strand, 11291131 - 11291028
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatcaa--ttttaaatgacctctagttttagggactaaacacgtataa 416  Q
    |||||||||||||||||||| |||| ||||||  ||||||||| || |||| || | |  |||||||||||  ||| || |||| |||||||||||||||    
T  11291131 ttttaagtgattaaattttggcatggcaaaatatcaggattaaggaatacaagaaccattttttaaatgactcctatttgtaggaactaaacacgtataa 11291032  T
Q  417 aagc 420  Q
    ||||    
T  11291031 aagc 11291028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 319 - 418
Target Start/End: Complemental strand, 22890201 - 22890101
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacgatca-attttaaatgacctctagttttagggactaaacacgtataaa 417  Q
    ||||||||||||||||||||||  ||||||||| || |||||| || |||| || ||  |||||||||||| ||| ||   |||||||||||| ||||||    
T  22890201 ttttaagtgattaaattttgacgggacaaaatgtcatgattaaggaatacaagaccattttttaaatgacccctatttaccgggactaaacacatataaa 22890102  T
Q  418 a 418  Q
    |    
T  22890101 a 22890101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 11291233 - 11291284
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 369  Q
    ||||||||||||||||||||||| | | |||||||||| ||||||||| ||||    
T  11291233 aattttaagtgattaaattttgataaggcaaaatgcca-gattaaagaataca 11291284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 20050189 - 20050145
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaa 361  Q
    |||||||||||||||||||||| || | ||||||||||| |||||    
T  20050189 aattttaagtgattaaattttggcagggcaaaatgccagaattaa 20050145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 24085880 - 24085836
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaa 361  Q
    ||||||||| |||||||||||| || ||||||||| |||||||||    
T  24085880 aattttaagcgattaaattttggcaggacaaaatgtcaggattaa 24085836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 361
Target Start/End: Original strand, 9427 - 9469
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 361  Q
    ||||||||||||||||||||||| |||||||| ||||||||||    
T  9427 ttttaagtgattaaattttgacaggacaaaataccaggattaa 9469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 317 - 361
Target Start/End: Complemental strand, 30380952 - 30380908
Alignment:
Q  317 aattttaagtgattaaattttgacatgacaaaatgccaggattaa 361  Q
    |||||||| |||||||||||||||||||||||||  |||||||||    
T  30380952 aattttaaatgattaaattttgacatgacaaaatatcaggattaa 30380908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 14633956 - 14633906
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattaca 369  Q
    ||||||||||||||||||||  | ||||||||| |||||||||||| ||||    
T  14633956 ttttaagtgattaaattttggtaggacaaaatgtcaggattaaagaataca 14633906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 33648672 - 33648629
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaaa 362  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||    
T  33648672 ttttaagtgattaaattttcacatgacaaaataccatgattaaa 33648629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 1215111 - 1215069
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 361  Q
    ||||||||||||||||||||||| | ||||||| |||||||||    
T  1215111 ttttaagtgattaaattttgacagggcaaaatgtcaggattaa 1215069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 319 - 361
Target Start/End: Complemental strand, 31124 - 31082
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaa 361  Q
    ||||||||||||||||||||||| |||||| |||||| |||||    
T  31124 ttttaagtgattaaattttgacaggacaaattgccagaattaa 31082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 410
Target Start/End: Complemental strand, 15714499 - 15714407
Alignment:
Q  319 ttttaagtgattaaattttgacatgacaaaatgccaggattaaagattacacg-atcaattttaaatgacctctagttttagggactaaacac 410  Q
    ||||||||||| |||||||| || | ||||||||||||||||| || |||| | | || ||||||||||||  || ||  |||||||||||||    
T  15714499 ttttaagtgatgaaattttggcagggcaaaatgccaggattaaggaatacatgaaccatttttaaatgacccatatttgcagggactaaacac 15714407  T

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