View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21514_high_1 (Length: 701)
Name: NF21514_high_1
Description: NF21514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21514_high_1 |
 | |
|
| [»] scaffold0082 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 584; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Original strand, 38121056 - 38121723
Alignment:
| Q |
1 |
ggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121056 |
ggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtca |
38121155 |
T |
|
| Q |
101 |
ctcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccggaagcttctcaagatcggcgattgacaagta |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121156 |
ctcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccggaagcttctcaagatcggcgattgacaagta |
38121255 |
T |
|
| Q |
201 |
atgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatcatcaacagcgaaaatagtcatgttgttgaga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38121256 |
atgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatcatcaacagcgaaaatagtcatgttgttgaga |
38121355 |
T |
|
| Q |
301 |
gttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||| |
|
|
| T |
38121356 |
gttatgagctctgcgtattttaccttcatagcaagggagaggatgctgaaaccgttattacggagccttaccattgcatctcgtagcatgaggcgcataa |
38121455 |
T |
|
| Q |
401 |
tagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgca |
500 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
38121456 |
tagcagggagcacggtggcgccgggagtgtgaacatgagcaccggaacggtgatcaggatgaaacggaaaggagagagaactcattctctcaacgtcgca |
38121555 |
T |
|
| Q |
501 |
agaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgttgaatagatctggttgagtaatctcaacgcctccgatg |
600 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38121556 |
agaaaacggagaaagcttagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagtaatctcaacgcctccgatg |
38121655 |
T |
|
| Q |
601 |
aagactttcggagcaccgctggaagtgctgttcggatgaatcgactcggaagtgacggttatgcaacg |
668 |
Q |
| |
|
|||||||| ||||||| || ||||||| ||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
38121656 |
aagacttttggagcactgccggaagtgttgttctgatgaatcgactcggaagtgacggttacgcaacg |
38121723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Complemental strand, 38609067 - 38608400
Alignment:
| Q |
1 |
ggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38609067 |
ggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtca |
38608968 |
T |
|
| Q |
101 |
ctcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccggaagcttctcaagatcggcgattgacaagta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38608967 |
ctcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagcttctcaagatcggcgatcgacaagta |
38608868 |
T |
|
| Q |
201 |
atgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatcatcaacagcgaaaatagtcatgttgttgaga |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38608867 |
ataattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgaga |
38608768 |
T |
|
| Q |
301 |
gttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
38608767 |
gttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaaccgttattacggagcctgagcattgcatctcgtagcatgaggcgcatta |
38608668 |
T |
|
| Q |
401 |
tagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgca |
500 |
Q |
| |
|
||||||| ||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38608667 |
tagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcaca |
38608568 |
T |
|
| Q |
501 |
agaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgttgaatagatctggttgagtaatctcaacgcctccgatg |
600 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
38608567 |
agaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagcaatctcaacgcctccgatg |
38608468 |
T |
|
| Q |
601 |
aagactttcggagcaccgctggaagtgctgttcggatgaatcgactcggaagtgacggttatgcaacg |
668 |
Q |
| |
|
|| ||||| |||||||||| || ||| |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
38608467 |
aaaacttttggagcaccgccggtagtaatgttcgaatgaatcgaatcggaagtgacggttatgcaacg |
38608400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Complemental strand, 38793850 - 38793183
Alignment:
| Q |
1 |
ggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793850 |
ggaaaaggcaaatacacactgtgcacaactatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtca |
38793751 |
T |
|
| Q |
101 |
ctcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccggaagcttctcaagatcggcgattgacaagta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
38793750 |
ctcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagcttctcaagatcggcgatcgacaagta |
38793651 |
T |
|
| Q |
201 |
atgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatcatcaacagcgaaaatagtcatgttgttgaga |
300 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38793650 |
ataattcggtatgatatggaatcgcacattgctgatgtacgattgagaaccggagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgaga |
38793551 |
T |
|
| Q |
301 |
gttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| | |
|
|
| T |
38793550 |
gttatgagctctgcgtattttaccttcatcgcaagggagaggatgctgaaaccgttattacggagcctgagcattgcatctcgtagcatgaggcgcatta |
38793451 |
T |
|
| Q |
401 |
tagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgca |
500 |
Q |
| |
|
||||||| ||||||||| ||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38793450 |
tagcagggagcacggtgacgccgtgagtgtgaacgtgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcaca |
38793351 |
T |
|
| Q |
501 |
agaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgttgaatagatctggttgagtaatctcaacgcctccgatg |
600 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
38793350 |
agaaaacggagaaagtgtagagacgaaaccttgaaggccgtgaacaacaaccattccgttgttgaatagatccggttgagcaatctcaacgcctccgatg |
38793251 |
T |
|
| Q |
601 |
aagactttcggagcaccgctggaagtgctgttcggatgaatcgactcggaagtgacggttatgcaacg |
668 |
Q |
| |
|
|| ||||| |||||||||| || ||| |||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
38793250 |
aaaacttttggagcaccgccggtagtaatgttcgaatgaatcgaatcggaagtgacggttatgcaacg |
38793183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 580; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 580; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Original strand, 28730630 - 28731297
Alignment:
| Q |
1 |
ggaaaaggcaaatacacgctgtgcacaacaatcttcacattgcggatgacgtcagcaaccttaactctcacatagttaatcctcatcggcgctgatgtca |
100 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||| |||||||||||||||||||| || || |||||||||||||||||||| ||| |||||| |
|
|
| T |
28730630 |
ggaaaaggcaaatacacactatgcacaactatcttcacattacggatgacgtcagcaaccttcaccctaacatagttaatcctcatcggtgctaatgtca |
28730729 |
T |
|
| Q |
101 |
ctcctccgccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaaccggaagcttctcaagatcggcgattgacaagta |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28730730 |
ctcctccaccggaagtagtgatcagaagcggctgacctcgctccaatgtaggcagagcagttccaactggaagcttctcaagatcggcgattgacaagta |
28730829 |
T |
|
| Q |
201 |
atgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatcatcaacagcgaaaatagtcatgttgttgaga |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28730830 |
acgattcggtatgatatggaatcgcacattgctgatatacgattgagaaccggagaatatagaaagatcatcaacggcgaaaatagtcatgttgttgaga |
28730929 |
T |
|
| Q |
301 |
gttatgagctctgcgtattttaccttcattgcgagggagaggatgctgaaaccgttattacggagcctgagcgctgtgtctcgtagcatgaggcgcataa |
400 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
28730930 |
gttatgagctcttcgtattttaccttcattgcaagggagaggatgctgaaaccgttattacggagcctgagcgttgtgtctcgtagcatgaggcgcataa |
28731029 |
T |
|
| Q |
401 |
tagcaggaagcacggtggcgccgggactgtgaacatgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgca |
500 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731030 |
tagcaggaagcacggtggcgccgggagtgtgaacatgagcactggaacggtgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgca |
28731129 |
T |
|
| Q |
501 |
agaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgttgaatagatctggttgagtaatctcaacgcctccgatg |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28731130 |
agaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaaccattccgttgttgaatagatctggttgagtaatctcaacgcctccgatg |
28731229 |
T |
|
| Q |
601 |
aagactttcggagcaccgctggaagtgctgttcggatgaatcgactcggaagtgacggttatgcaacg |
668 |
Q |
| |
|
|| ||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
28731230 |
aatacttttggagcaccgccggaagtgctgttcggatgaatcgactcggaagtgacagttacgcaacg |
28731297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 451 - 596
Target Start/End: Original strand, 34038 - 34183
Alignment:
| Q |
451 |
tgatcaggatgaaacggaaaggagagtgaagtcattctctcaacgtcgcaagaaaacggagaaagcgtagaggcgaaaccttgaaggccgtgaacaacaa |
550 |
Q |
| |
|
||||| ||||| ||||| || ||||| || ||||| ||||| ||||||||| |||||||||| |||| |||| ||||||||||||||| |||| ||| | |
|
|
| T |
34038 |
tgatctggatggaacgggaacgagagcgaggtcatcctctccacgtcgcaataaaacggagagagcggagagatgaaaccttgaaggccatgaataacca |
34137 |
T |
|
| Q |
551 |
ccattccgttgttgaatagatctggttgagtaatctcaacgcctcc |
596 |
Q |
| |
|
|||| ||||||||||| ||||| ||||| || ||||| || ||||| |
|
|
| T |
34138 |
ccatgccgttgttgaagagatcaggttgcgtgatctccacccctcc |
34183 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 621 - 668
Target Start/End: Original strand, 31529204 - 31529251
Alignment:
| Q |
621 |
ggaagtgctgttcggatgaatcgactcggaagtgacggttatgcaacg |
668 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31529204 |
ggaagtgttgttcggatgaatcgactcggaagtgacggttacgcaacg |
31529251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 621 - 668
Target Start/End: Original strand, 51801272 - 51801319
Alignment:
| Q |
621 |
ggaagtgctgttcggatgaatcgactcggaagtgacggttatgcaacg |
668 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| ||| |||||| |
|
|
| T |
51801272 |
ggaagtgttgttcggatgaatcgaatcggaagtgacgattacgcaacg |
51801319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 622 - 668
Target Start/End: Complemental strand, 34876015 - 34875969
Alignment:
| Q |
622 |
gaagtgctgttcggatgaatcgactcggaagtgacggttatgcaacg |
668 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
34876015 |
gaagtgttgttcggatgaatcgactcggaagtgatggttacgcaacg |
34875969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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