View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21514_high_5 (Length: 424)

Name: NF21514_high_5
Description: NF21514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21514_high_5
NF21514_high_5
[»] chr3 (2 HSPs)
chr3 (53-406)||(33809211-33809549)
chr3 (5-56)||(33809566-33809617)
[»] chr5 (4 HSPs)
chr5 (229-308)||(3622802-3622881)
chr5 (231-322)||(36526990-36527080)
chr5 (144-176)||(19275599-19275631)
chr5 (221-257)||(36630671-36630707)
[»] chr8 (3 HSPs)
chr8 (234-308)||(4154580-4154654)
chr8 (223-384)||(9620514-9620675)
chr8 (240-303)||(41039272-41039336)
[»] chr2 (2 HSPs)
chr2 (260-308)||(33561747-33561795)
chr2 (223-300)||(30313338-30313415)
[»] scaffold0113 (1 HSPs)
scaffold0113 (222-302)||(39614-39694)


Alignment Details
Target: chr3 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 53 - 406
Target Start/End: Complemental strand, 33809549 - 33809211
Alignment:
Q  53 gtttatattgattgtaaaatcatattaattttaggaacttaatgttgtatgcaactaatatgtctc--------tataaaggtgaaggttgaacgcactc 144  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||        |||||| |||||||||||||||||||    
T  33809549 gtttatattgattgtaaaatcatattaattttaggaacttaatgttgtgtgcaactaatatgtctcacatcggatataaaagtgaaggttgaacgcactc 33809450  T
Q  145 ataaattcattgtcttaagattttgagtaagagtatagtgttactctcacttgtgtggnnnnnnngttgtgattaattggctctcctcgtgacctaacaa 244  Q
    ||||| | ||| |||||| ||||||||||||||||| || ||||| ||||||||||||       ||||||||||||||||||||||||||||||||||     
T  33809449 ataaacttattttcttaaaattttgagtaagagtatggt-ttactttcacttgtgtggttgttttgttgtgattaattggctctcctcgtgacctaacag 33809351  T
Q  245 tgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgacctggtgtccaggcgctgggtgttgttgtgttggaag 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||| |||| |||||||||||||||||    
T  33809350 tgatatcaaagtcgaggttcgacaaatggttcaaccgactcctt----------------------ggtgtccaggcactggttgttgttgtgttggaag 33809273  T
Q  345 cgacaatggtggtatgagcaattgtgtgcggatgaaagagatccaggttaaggaggagtgag 406  Q
    || ||||||||| ||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  33809272 cggcaatggtggcatgagcaattgtgtgcggatgaaagagatacaacttaaggaggagtgag 33809211  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 5 - 56
Target Start/End: Original strand, 33809566 - 33809617
Alignment:
Q  5 ggatttcacaatcaaatatttaaaagattttaaatgactttaagtttcgttt 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33809566 ggatttcacaatcaaatatttaaaagattttaaatgactttaagtttcgttt 33809617  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 229 - 308
Target Start/End: Complemental strand, 3622881 - 3622802
Alignment:
Q  229 cctcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgac 308  Q
    |||| ||||| ||||||| ||||| ||| |||||||||| || ||||| |||||||||||||||| ||||| ||||||||    
T  3622881 cctcatgacccaacaatggtatcagagttgaggttcgacgaagggttcgaccgactccttgtgtcaaaagttttcttgac 3622802  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 322
Target Start/End: Complemental strand, 36527080 - 36526990
Alignment:
Q  231 tcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgacctggtgtccaggcg 322  Q
    |||||||| ||||||| ||||| || |  ||||| ||||||||| | ||||||| ||| |||||||||||||| |||| |||||| ||||||    
T  36527080 tcgtgacccaacaatggtatcagagccc-ggttcaacaaatggtacgaccgacttcttatgtcgaaagtcttcctgacatggtgttcaggcg 36526990  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 176
Target Start/End: Original strand, 19275599 - 19275631
Alignment:
Q  144 cataaattcattgtcttaagattttgagtaaga 176  Q
    |||||||||||||||||||||||||| ||||||    
T  19275599 cataaattcattgtcttaagattttgggtaaga 19275631  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 36630707 - 36630671
Alignment:
Q  221 ttggctctcctcgtgacctaacaatgatatcaaagtc 257  Q
    |||| |||||||||||| |||||||||||||||||||    
T  36630707 ttggatctcctcgtgacataacaatgatatcaaagtc 36630671  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 4154654 - 4154580
Alignment:
Q  234 tgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgac 308  Q
    ||||| |||| || |||||||| |||| |||||| || |||||||||| |||||||| |||||||||||||||||    
T  4154654 tgacccaacagtggtatcaaagccgagtttcgacgaagggttcaaccggctccttgtatcgaaagtcttcttgac 4154580  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 384
Target Start/End: Complemental strand, 9620675 - 9620514
Alignment:
Q  223 ggctctcctcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgacctggtgtccaggcg 322  Q
    ||||| |||||||||| ||| ||| ||||| ||| | |||||||| || ||||| | ||  |||||||||||||||||||   |||  |||||| ||| |    
T  9620675 ggctcccctcgtgacccaacgatggtatcagagttgtggttcgacgaagggttctatcggatccttgtgtcgaaagtctttcggacaaggtgtctaggag 9620576  T
Q  323 ctgggtgttgttgtgttggaagcgacaatggtggtatgagcaattgtgtgcggatgaaagag 384  Q
        ||  ||||||| ||||||||||||||| ||||  |||||  |||||||||||||||||    
T  9620575 gcatgttctgttgtggtggaagcgacaatggcggtagaagcaagagtgtgcggatgaaagag 9620514  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 41039336 - 41039272
Alignment:
Q  240 aacaatgatatcaaagtcga-ggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttc 303  Q
    ||||||||||||| | | || |||||||| || ||||||||| |||| |||||||||||||||||    
T  41039336 aacaatgatatcagaattgatggttcgacgaagggttcaaccaactctttgtgtcgaaagtcttc 41039272  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 33561795 - 33561747
Alignment:
Q  260 ggttcgacaaatggttcaaccgactccttgtgtcgaaagtcttcttgac 308  Q
    ||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  33561795 ggttcgacaaagggtacaaccgactccttgtttcgaaagtcttcttgac 33561747  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 30313338 - 30313415
Alignment:
Q  223 ggctctcctcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtc 300  Q
    |||||||||||||||| |||| || ||||| ||||| |||| ||| ||| |||| | |  ||||||||||||||||||    
T  30313338 ggctctcctcgtgacccaacagtggtatcagagtcgtggtttgacgaatagttcgatcagctccttgtgtcgaaagtc 30313415  T

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Target: scaffold0113 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 302
Target Start/End: Original strand, 39614 - 39694
Alignment:
Q  222 tggctctcctcgtgacctaacaatgatatcaaagtcgaggttcgacaaatggttcaaccgactccttgtgtcgaaagtctt 302  Q
    |||||| ||| |||||| |||| || ||||| || ||||||||||| || ||||| |||  ||||||||||||||||||||    
T  39614 tggctcccctagtgacccaacagtggtatcagagccgaggttcgacgaagggttcgaccatctccttgtgtcgaaagtctt 39694  T

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