View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21514_low_13 (Length: 213)
Name: NF21514_low_13
Description: NF21514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21514_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 10 - 198
Target Start/End: Original strand, 26537571 - 26537759
Alignment:
| Q |
10 |
tcgaagaaaataaagtctataaataatgtgaaatttccgcctctgccaatctgtgcttcaaaagtgatttattaaatatacaaaacatttaatttattta |
109 |
Q |
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| T |
26537571 |
tcgaagtaaatacagtctataaataatgtgaaatttccgcctctgccaatctgtgcttcaaaagtgatttattaaatatacaaaacatttaatttatttg |
26537670 |
T |
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| Q |
110 |
ctgatgttgtgttaaatactgttgttcacattctgttagctggtagatgaaattttcaatcctaatgcagttcctttatgcagttgatg |
198 |
Q |
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| T |
26537671 |
ctgatgttgtgttaaatactgttgttcacattgtgttagctggtagatgaaattttcaatcctaatgcagttcctttatgcagttgatg |
26537759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 26543192 - 26543260
Alignment:
| Q |
14 |
agaaaataaagtctataaataatgtgaaatttccgcctctgccaatctgtgcttcaaaagtgatttatt |
82 |
Q |
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| T |
26543192 |
agaaattacagtctataaattatgtgaaattttctcctctcacattctgtacttcaaaagtgatttatt |
26543260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 181
Target Start/End: Original strand, 26533591 - 26533658
Alignment:
| Q |
113 |
atgttgtgttaaatactgttgttcacattctgttagctggtagatgaaattttcaatcctaatgcagtt |
181 |
Q |
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| T |
26533591 |
atgttgttttaaatactgtttttcacattttgttatcaggtagaag-atttttccatcctaatgcagtt |
26533658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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