View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21514_low_3 (Length: 683)

Name: NF21514_low_3
Description: NF21514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21514_low_3
NF21514_low_3
[»] chr3 (8 HSPs)
chr3 (496-676)||(10538515-10538695)
chr3 (496-676)||(10683199-10683379)
chr3 (207-259)||(10532970-10533022)
chr3 (198-250)||(11772867-11772916)
chr3 (198-235)||(11778507-11778544)
chr3 (121-169)||(10093290-10093338)
chr3 (121-169)||(10200172-10200220)
chr3 (1-49)||(10521644-10521692)
[»] chr4 (1 HSPs)
chr4 (190-269)||(17848731-17848810)
[»] chr2 (1 HSPs)
chr2 (199-235)||(26910696-26910732)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 3e-71; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 496 - 676
Target Start/End: Original strand, 10538515 - 10538695
Alignment:
Q  496 tctatacaacataaaactttagactatttacaagtgaattttgttgcaattttgacaatgcaatgccatgaatctgtctgattctctcccttgatagttt 595  Q
    |||| |||||||||||||||||||||| |||||  | ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  10538515 tctaaacaacataaaactttagactatctacaatagtattttgtcgcaattttgacaatgcaatgccatgaatctgtctgattctctctcttgatagttt 10538614  T
Q  596 caacaactttcctatctcttcaaaagacagaggggtctctccattgagtccaaagtataatattacaatctcttcttctct 676  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10538615 caacagctttcctatctcctcaaaagacaaaggggtctctccattgagtccaaagtataatcttacaatctcttcttctct 10538695  T

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Target: chr3; HSP #2
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 496 - 676
Target Start/End: Original strand, 10683199 - 10683379
Alignment:
Q  496 tctatacaacataaaactttagactatttacaagtgaattttgttgcaattttgacaatgcaatgccatgaatctgtctgattctctcccttgatagttt 595  Q
    ||||||||||||||||||||||||||| |||||| | |||||||| |||||||||||||||||| ||||||||||||||||| ||||| |||||||||||    
T  10683199 tctatacaacataaaactttagactatctacaagggtattttgttccaattttgacaatgcaataccatgaatctgtctgatcctctctcttgatagttt 10683298  T
Q  596 caacaactttcctatctcttcaaaagacagaggggtctctccattgagtccaaagtataatattacaatctcttcttctct 676  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10683299 caacagctttcctatctcctcaaaagacaaaggggtctctccattgagtccaaagtataatcttacaatctcttcttctct 10683379  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 10532970 - 10533022
Alignment:
Q  207 aatattgggaacttgtttgagtaacataataaagattgatgttcctgatgcat 259  Q
    |||||||| |||||||||| |||||||||||| ||||| ||||||||||||||    
T  10532970 aatattggaaacttgtttgtgtaacataataatgattggtgttcctgatgcat 10533022  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 11772867 - 11772916
Alignment:
Q  198 ttggttcttaatattgggaacttgtttgagtaacataataaagattgatgttc 250  Q
    |||||||| |||||||| ||||||||||||||||   ||||||||||||||||    
T  11772867 ttggttctaaatattggcaacttgtttgagtaac---ataaagattgatgttc 11772916  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 235
Target Start/End: Complemental strand, 11778544 - 11778507
Alignment:
Q  198 ttggttcttaatattgggaacttgtttgagtaacataa 235  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  11778544 ttggttctaaatattggcaacttgtttgagtaacataa 11778507  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 10093290 - 10093338
Alignment:
Q  121 ttgtttgtatgtggcatcatgaagcatacataaatggaacaagttgaag 169  Q
    ||||| |||||||| | ||||||||||| ||||||||||||||| ||||    
T  10093290 ttgttagtatgtggaaacatgaagcataaataaatggaacaagtagaag 10093338  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 10200172 - 10200220
Alignment:
Q  121 ttgtttgtatgtggcatcatgaagcatacataaatggaacaagttgaag 169  Q
    ||||| |||||||| | ||||||||||| ||||||||||||||| ||||    
T  10200172 ttgttagtatgtggaaacatgaagcataaataaatggaacaagtagaag 10200220  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 10521644 - 10521692
Alignment:
Q  1 tgacttcatctttgtatattcttcaatactatgcacagaagggtttgta 49  Q
    |||||||| ||||| ||||| ||||||||||||||||  ||||||||||    
T  10521644 tgacttcacctttgaatatttttcaatactatgcacaacagggtttgta 10521692  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 269
Target Start/End: Complemental strand, 17848810 - 17848731
Alignment:
Q  190 ccatgttgttggttcttaatattgggaacttgtttgagtaacataataaagattgatgttcctgatgcatgttgaataaa 269  Q
    |||||||||||||||| |||||||  || || |||||| |||||||| || |||||||||| || ||||| ||| |||||    
T  17848810 ccatgttgttggttctaaatattgacaagttatttgaggaacataatcaaaattgatgttcttggtgcatattgcataaa 17848731  T

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Target: chr2 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 199 - 235
Target Start/End: Original strand, 26910696 - 26910732
Alignment:
Q  199 tggttcttaatattgggaacttgtttgagtaacataa 235  Q
    ||||||| |||||||| ||||||||||||||||||||    
T  26910696 tggttctaaatattggaaacttgtttgagtaacataa 26910732  T

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