View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21514_low_4 (Length: 507)

Name: NF21514_low_4
Description: NF21514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21514_low_4
NF21514_low_4
[»] chr3 (10 HSPs)
chr3 (19-491)||(26745446-26745918)
chr3 (106-491)||(26738501-26738883)
chr3 (12-492)||(26715168-26715644)
chr3 (86-483)||(26692952-26693346)
chr3 (43-483)||(26676853-26677290)
chr3 (43-483)||(26688800-26689237)
chr3 (124-491)||(26700107-26700471)
chr3 (263-440)||(26752633-26752810)
chr3 (123-384)||(26735263-26735521)
chr3 (285-377)||(47191922-47192014)
[»] chr7 (3 HSPs)
chr7 (131-171)||(21097292-21097332)
chr7 (131-171)||(21106911-21106951)
chr7 (50-173)||(18659961-18660084)


Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 19 - 491
Target Start/End: Original strand, 26745446 - 26745918
Alignment:
Q  19 gataagacagagaagattgtcgtagttgaataaaagcttgtagaagccagatgaataatcattctcgctttttgaggaaacgagttgcatgtaccttgtg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||    
T  26745446 gataagacagagaagattgtcgtagttgaataaaagcttgtagaagccagatgaatagtcattcttgctttttgaggaaatgagttgcatgtaccttgtg 26745545  T
Q  119 aaactttgatcaggaaggagagtatctgttggggaatcaaaactctgccacaagaaattggaaacaatggtgttgtgttctcgaagaatgagatttcctg 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  26745546 aaactttgatcaggaaggagagtatctgttggggaatcaaaactctgccacaagaaattggaaacaatagtgttgtgttctcgaagaatgagatttcctg 26745645  T
Q  219 tgtcgcacaaaaacaactcaagttttttggatgagttagtgtttgtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggttgccagttttgag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26745646 tgtcgcacaaaaacaactcaagttttttggatgagttagtgtttgtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggttgccagttttgag 26745745  T
Q  319 aagggaaagtgttgagcgttttccgttaactggttggtcacgattagccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccat 418  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||||||||||    
T  26745746 aagggaaagtgttgagcgttttccgttaacaggttggtcacgattagccatccaaacaacggtaggattggaaaggtttttgtgtttttgagtgaaccat 26745845  T
Q  419 atggcgaatgaataagcattttcacctacgggataaaagcccgcggtgaatgtgcctttgggtgagactataa 491  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  26745846 atggcgaatgaataagcattttcacctacgggataaaaacccgcggtgaatgtgcctttgggtgagactataa 26745918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 106 - 491
Target Start/End: Original strand, 26738501 - 26738883
Alignment:
Q  106 catgtaccttgtgaaactttgatcaggaaggagagtatctgttggggaatcaaaactctgccacaagaaattggaaacaatggtgttgtgttctcgaaga 205  Q
    |||||||||||||||||||||||| |||||||| |||||||||||  |||||||||| |||||||| |   || || || | ||||| |||||||  |||    
T  26738501 catgtaccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaactttgccacaaaa---tgaaaccatttgtgttatgttctctgaga 26738597  T
Q  206 atgagatttcctgtgtcgcacaaaaacaactcaagttttttggatgagttagtgtttgtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggt 305  Q
    ||||||||||| || ||| |||||| ||||||||||| ||||  |||||  |||||||| |||||||| || ||||||||||||||||||||||||||||    
T  26738598 atgagatttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtagaccaaacattaaactgtcctgcgtcggttaaaatgaggt 26738697  T
Q  306 tgccagttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgattagccatccaaacaacggtagcattggtgaggtttttgtgttt 405  Q
    |||| || || |||||||||||||| |||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  26738698 tgccggtattaagaagggaaagtgtcgagcgttttccgtttactggctgttcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgttt 26738797  T
Q  406 ttgagtgaaccatatggcgaatgaataagcattttcacctacgggataaaagcccgcggtgaatgtgcctttgggtgagactataa 491  Q
    |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||    
T  26738798 ttgagtgaaccatatggcgaatgaataagcattttcgcctacaggataaaagcccgcggtgaatgtgcctttgggtgagacaataa 26738883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 492
Target Start/End: Original strand, 26715168 - 26715644
Alignment:
Q  12 catcatcgataagacagagaagattgtcgtagttgaataaaagcttgtagaagccagatgaataatcattctcgctttttgaggaaacgagttgcatgta 111  Q
    |||||| || ||||| ||||||||| |||| ||  || |||||||||||| ||| ||| ||||| |   | || ||||| || ||||| || | ||||||    
T  26715168 catcatagagaagacggagaagattatcgttgtcaaagaaaagcttgtagcagctagaggaatagttggtgtctcttttggacgaaacaaggttcatgta 26715267  T
Q  112 ccttgtgaaactttgatcaggaaggagagtatctgttggggaatcaaaactctgccacaagaaattggaaacaatggtgttgtgttctcgaagaatgaga 211  Q
    |||||||||||||||||| |||||||| |||||||||||  ||||||||||  ||||||| |   || || || |  |||| |||||||  | |||||||    
T  26715268 ccttgtgaaactttgatcgggaaggagggtatctgttggaaaatcaaaacttcgccacaaaa---tgaaaccatttttgttatgttctctgaaaatgaga 26715364  T
Q  212 tttcctgtgtcgcacaaaaacaactcaagttttttggatgagttagtgtttgtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggttgccag 311  Q
    ||||| || ||| |||||| ||||||||||| ||||  |||||  ||||||||||||||||| || |||||||||||||||||||||||||||||||| |    
T  26715365 tttcccgtatcgtacaaaaccaactcaagttgtttgagtgagtatgtgtttgtggaccaaacattaaactgtcctgcgtcggttaaaatgaggttgccgg 26715464  T
Q  312 ttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgattagccatccaaacaacggtagcattggtgaggtttttgtgtttttgagt 411  Q
    | || |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26715465 tattaagaagggaaagtgtcgagcgttt-ccgttaactggttggtcacgatttgccatccaaacaacggtagcattggtgaggtttttgtgtttttgagt 26715563  T
Q  412 gaaccatatggcgaatgaataagcattttcacctacgggataaaagcccgcggtgaatgtgcctttgggtgagactataac 492  Q
    |||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||    
T  26715564 gaaccatatggcgaatgaataagcattttcacgtaccggataaaagcctgcggtgaatgtgccttcgggtgagactataac 26715644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 86 - 483
Target Start/End: Complemental strand, 26693346 - 26692952
Alignment:
Q  86 ctttttgaggaaacgagttgcatgtaccttgtgaaactttgatcaggaaggagagtatctgttggggaatcaaaactctgccacaagaaattggaaacaa 185  Q
    ||||| |||||||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||  ||||||| || |||||||| |    | || |||    
T  26693346 cttttggaggaaacaagtttcatgtgccttgtgaaactttgatcaggaaggagggtatctgttggaaaatcaaagctttgccacaaaac---gaaaccaa 26693250  T
Q  186 tggtgttgtgttctcgaagaatgagatttcctgtgtcgcacaaaaacaactcaagttttttggatgagttagtgtttgtggaccaaacgttgaactgtcc 285  Q
    |  ||||||| ||||  || | |||||||||||| ||| |||||| ||||||||||  |||||||||||||||||||||||||||||| |  || |||||    
T  26693249 ttttgttgtgctctctgaggacgagatttcctgtatcgtacaaaatcaactcaagtggtttggatgagttagtgtttgtggaccaaacatcaaaatgtcc 26693150  T
Q  286 tgcgtcggttaaaatgaggttgccagttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgattagccatccaaacaacggtagca 385  Q
     ||||| ||||| |  ||||| || |||||||||||||||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||||||||     
T  26693149 cgcgtcagttaatacaaggttcccggttttgagaagggaaagtcttgagcattttccgttaacaggttggtcacgatttgccatccaaacaacggtagcg 26693050  T
Q  386 ttggtgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcattttcacctacgggataaaagcccgcggtgaatgtgcctttgggtga 483  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||    
T  26693049 ttggcgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcattttcacctacgggataaaaacccgcagtgaatgtgccttttggtga 26692952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 43 - 483
Target Start/End: Original strand, 26676853 - 26677290
Alignment:
Q  43 gttgaataaaagcttgtagaagccagatgaataatcattctcgctttttgaggaaacgagttgcatgtaccttgtgaaactttgatcaggaaggagagta 142  Q
    |||||| | |||||| ||||| || ||||||||  | || || ||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||    
T  26676853 gttgaaaagaagcttatagaaccctgatgaatatacgttgtcacttttcgaggaaacaagtttcatgtaccttgtgaaactttgatcaggaaggagggta 26676952  T
Q  143 tctgttggggaatcaaaactctgccacaagaaattggaaacaatggtgttgtgttctcgaagaatgagatttcctgtgtcgcacaaaaacaactcaagtt 242  Q
    ||||||||  ||||||| ||  ||||||| |   || || || | || ||| ||||||| ||||  || |||||| ||||| | |||||||||||||||     
T  26676953 tctgttggaaaatcaaagcttcgccacaaaa---tgaaaccatttgttttgcgttctcggagaacaaggtttcctatgtcgtataaaaacaactcaagtg 26677049  T
Q  243 ttttggatgagttagtgtttgtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggttgccagttttgagaagggaaagtgttgagcgttttcc 342  Q
     ||||||||||||||| ||||||||||| || ||| | |||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||    
T  26677050 gtttggatgagttagtatttgtggaccatacattggaatgtcctgcatcggttaagacgaggttgccggttttgagaagggaaagtgttgagcgttttcc 26677149  T
Q  343 gttaactggttggtcacgattagccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcattttca 442  Q
    ||||||||||||||||||||| |||||||||||||| ||||| ||| | || ||||||||| ||||||||||||||||||| || |||||||||||||||    
T  26677150 gttaactggttggtcacgatttgccatccaaacaacagtagcgttgtttagatttttgtgtatttgagtgaaccatatggcaaaggaataagcattttca 26677249  T
Q  443 cctacgggataaaagcccgcggtgaatgtgcctttgggtga 483  Q
    || |||| ||||||||| ||||| ||||| |||||||||||    
T  26677250 ccgacggaataaaagcctgcggtaaatgtacctttgggtga 26677290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 43 - 483
Target Start/End: Complemental strand, 26689237 - 26688800
Alignment:
Q  43 gttgaataaaagcttgtagaagccagatgaataatcattctcgctttttgaggaaacgagttgcatgtaccttgtgaaactttgatcaggaaggagagta 142  Q
    |||||| | |||||| ||||| || ||||||||  | || || ||||| |||||||| |||| ||||||||||||||||||||||||||||||||| |||    
T  26689237 gttgaaaagaagcttatagaaccctgatgaatatacgttgtcacttttcgaggaaacaagtttcatgtaccttgtgaaactttgatcaggaaggagggta 26689138  T
Q  143 tctgttggggaatcaaaactctgccacaagaaattggaaacaatggtgttgtgttctcgaagaatgagatttcctgtgtcgcacaaaaacaactcaagtt 242  Q
    ||||||||  ||||||| ||  ||||||| |   || || || | || ||| ||||||| ||||  || |||||| ||||  | |||||||||||||||     
T  26689137 tctgttggaaaatcaaagcttcgccacaaaa---tgaaaccatttgttttgcgttctcggagaacaaggtttcctatgtcatataaaaacaactcaagtg 26689041  T
Q  243 ttttggatgagttagtgtttgtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggttgccagttttgagaagggaaagtgttgagcgttttcc 342  Q
     ||||||||||||||| ||||||||||| || ||| | |||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||    
T  26689040 gtttggatgagttagtatttgtggaccatacattggaatgtcctgcatcggttaagacgaggttgccggttttgagaagggaaagtgttgagcgttttcc 26688941  T
Q  343 gttaactggttggtcacgattagccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcattttca 442  Q
    ||||||||||||||||||||| |||||||||||||| ||||| ||| | || ||||||||| ||||||||||||||||||| || |||||||||||||||    
T  26688940 gttaactggttggtcacgatttgccatccaaacaacagtagcgttgtttagatttttgtgtatttgagtgaaccatatggcaaaggaataagcattttca 26688841  T
Q  443 cctacgggataaaagcccgcggtgaatgtgcctttgggtga 483  Q
    || |||| ||||||||| ||||| ||||| |||||||||||    
T  26688840 ccgacggaataaaagcctgcggtaaatgtacctttgggtga 26688800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 124 - 491
Target Start/End: Original strand, 26700107 - 26700471
Alignment:
Q  124 ttgatcaggaaggagagtatctgttggggaatcaaaactctgccacaagaaattggaaacaatggtgttgtgttctcgaagaatgagatttcctgtgtcg 223  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||| |    | || || |  |||  |||||||  |||| ||| |||||||| |||    
T  26700107 ttgatcaggaaggagagtatctgttgggaaatcaaaactttgccacaaaac---gaaaccatttatgtcttgttctctcagaacgaggtttcctgtttcg 26700203  T
Q  224 cacaaaaacaactcaagttttttggatgagttagtgtttgtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggttgccagttttgagaaggg 323  Q
     |||||||||||| ||||  |||||||||||| || | ||| |||||||| ||| ||   ||||| |||||||| |  |||||||| ||||| |||||||    
T  26700204 tacaaaaacaactgaagtgatttggatgagtttgtttctgttgaccaaacattggacacccctgcatcggttaatacaaggttgccggttttaagaaggg 26700303  T
Q  324 aaagtgttgagcgttttccgttaactggttggtcacgattagccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccatatggc 423  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||| |||| |||||||||||||| ||||||||||| ||    
T  26700304 aaagtgttgagcgttttccgttaactggttggtcacgatttgccacccaaacaacggtagcgttgttgagatttttgtgtttttgggtgaaccatatagc 26700403  T
Q  424 gaatgaataagcattttcacctacgggataaaagcccgcggtgaatgtgcctttgggtgagactataa 491  Q
     || |||||||||||||| || || || || || || || |||||||| ||||| |||||||||||||    
T  26700404 aaaggaataagcattttctccaacagggtagaaacctgctgtgaatgtacctttaggtgagactataa 26700471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 263 - 440
Target Start/End: Original strand, 26752633 - 26752810
Alignment:
Q  263 gtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggttgccagttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgat 362  Q
    |||||||||||  || ||||  |||| || ||||| | |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  26752633 gtggaccaaacaatggactgagctgcatctgttaagacgaggtttccagttttgagaagggaaagtgttgagcgttttccattaactggttggtcacgat 26752732  T
Q  363 tagccatccaaacaacggtagcattggtgaggtttttgtgtttttgagtgaaccatatggcgaatgaataagcatttt 440  Q
    | ||||||||||||| |||||  ||| |||| |||||||||||||| |||||||||||||| || |||||||||||||    
T  26752733 ttgccatccaaacaatggtagtgttgttgagatttttgtgtttttgggtgaaccatatggcaaaggaataagcatttt 26752810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 123 - 384
Target Start/End: Original strand, 26735263 - 26735521
Alignment:
Q  123 tttgatcaggaaggagagtatctgttggggaatcaaaactctgccacaagaaattggaaacaatggtgttgtgttctcgaagaatgagatttcctgtgtc 222  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||| |    | || || |  |||  |||||||  |||| ||| |||||||| ||    
T  26735263 tttgatcaggaaggagagtatctgttgggaaatcaaaactttgccacaaaac---gaaaccatttatgtcttgttctctcagaacgaggtttcctgtttc 26735359  T
Q  223 gcacaaaaacaactcaagttttttggatgagttagtgtttgtggaccaaacgttgaactgtcctgcgtcggttaaaatgaggttgccagttttgagaagg 322  Q
    | |||||||||||| ||||  |||||||||| |||| || || |||||||||||| ||   || || |||||||| |  || ||||| || || ||||||    
T  26735360 gtacaaaaacaactgaagtgctttggatgagctagttttagtcgaccaaacgttggacaacccagcatcggttaatactagattgccggtattaagaagg 26735459  T
Q  323 gaaagtgttgagcgttttccgttaactggttggtcacgattagccatccaaacaacggtagc 384  Q
    |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||    
T  26735460 gaaagtgttgagcgttttccattaactggttgatcacgatttgccatccaaacaacggtagc 26735521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 285 - 377
Target Start/End: Complemental strand, 47192014 - 47191922
Alignment:
Q  285 ctgcgtcggttaaaatgaggttgccagttttgagaagggaaagtgttgagcgttttccgttaactggttggtcacgattagccatccaaacaa 377  Q
    |||| |||||||||||||| || ||  |||||| ||| || ||| ||||| |||| |||||||| |||||||| |  ||||||||||||||||    
T  47192014 ctgcatcggttaaaatgagattaccgtttttgaaaagtgagagttttgagtgtttgccgttaacaggttggtctctgttagccatccaaacaa 47191922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 21097332 - 21097292
Alignment:
Q  131 ggaaggagagtatctgttggggaatcaaaactctgccacaa 171  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  21097332 ggaaggagagtatctgttggagagtcaaaactctgccacaa 21097292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 21106951 - 21106911
Alignment:
Q  131 ggaaggagagtatctgttggggaatcaaaactctgccacaa 171  Q
    |||||||||||||||||||| || |||||||||||||||||    
T  21106951 ggaaggagagtatctgttggagagtcaaaactctgccacaa 21106911  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 173
Target Start/End: Original strand, 18659961 - 18660084
Alignment:
Q  50 aaaagcttgtagaagccagatgaataatcattctcgctttttgaggaaacgagttgcatgtaccttgtgaaactttgatcaggaaggagagtatctgttg 149  Q
    |||| ||| ||||||||||| |||| || | | | ||||||||| ||||| ||||  ||||| || |||| |  ||||| |||||||||||||| |||||    
T  18659961 aaaaacttatagaagccagaagaatgattactttggctttttgaagaaacaagttttatgtatctagtgagaggttgattaggaaggagagtatttgttg 18660060  T
Q  150 gggaatcaaaactctgccacaaga 173  Q
    || ||||| | || ||||||||||    
T  18660061 ggaaatcatagctttgccacaaga 18660084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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