View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21514_low_7 (Length: 314)

Name: NF21514_low_7
Description: NF21514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21514_low_7
NF21514_low_7
[»] chr5 (15 HSPs)
chr5 (19-314)||(1599902-1600198)
chr5 (49-267)||(8529192-8529411)
chr5 (19-314)||(8535709-8536005)
chr5 (49-314)||(9074358-9074621)
chr5 (49-314)||(8641585-8641854)
chr5 (59-273)||(2844702-2844920)
chr5 (59-273)||(2874139-2874357)
chr5 (59-273)||(2856529-2856747)
chr5 (54-247)||(8644485-8644687)
chr5 (52-251)||(9003735-9003932)
chr5 (56-250)||(2904642-2904839)
chr5 (51-247)||(8678087-8678293)
chr5 (54-247)||(8637140-8637342)
chr5 (56-168)||(3380812-3380924)
chr5 (57-168)||(8547750-8547857)
[»] chr7 (2 HSPs)
chr7 (19-314)||(48361454-48361750)
chr7 (53-251)||(35780085-35780283)
[»] chr4 (1 HSPs)
chr4 (49-267)||(9443353-9443572)
[»] chr6 (1 HSPs)
chr6 (57-243)||(16716647-16716833)
[»] scaffold0627 (1 HSPs)
scaffold0627 (59-243)||(4948-5130)
[»] chr1 (2 HSPs)
chr1 (49-249)||(5131041-5131241)
chr1 (49-97)||(26324139-26324187)


Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 1599902 - 1600198
Alignment:
Q  19 taaacgtgccaatgcgttggagtttaagattgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1599902 taaacgtgccaatgcgttggagtttaagattgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttct 1600001  T
Q  119 ttttggatgcttaagaatcccatttgtgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtg 218  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1600002 ttttggatgcttaagaatcccacttgtgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtg 1600101  T
Q  219 agaggttgcagtcatttccttctcctccacatgag-ttggaaatcataataatggaactcgtggtaacagccatgttagcatgggagaattaaaggg 314  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1600102 agaggttgcagtcatttccttctcctccacatgagtttggaaatcataataatggaacttgtggtaacagccatgttagcatgggagaattaaaggg 1600198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 49 - 267
Target Start/End: Complemental strand, 8529411 - 8529192
Alignment:
Q  49 tgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtg 148  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||  || ||| |||||| |||||||    
T  8529411 tgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtg 8529312  T
Q  149 aatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccac 248  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||    
T  8529311 aatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattggttttctgctttgaaaatgagaggttgcagtcgtttccttctcctccac 8529212  T
Q  249 atgag-ttggaaatcataat 267  Q
    ||| | ||||||||||||||    
T  8529211 atgtgtttggaaatcataat 8529192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 8536005 - 8535709
Alignment:
Q  19 taaacgtgccaatgcgttggagtttaagattgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttct 118  Q
    |||||||||||||| || ||||||| ||  | ||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8536005 taaacgtgccaatgtgtgggagtttgagcgtttgacccttgagataaacacacttggaaccccatcctggagaaatgttgaagtggatcctcaaatttct 8535906  T
Q  119 ttttggatgcttaagaatcccatttgtgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtg 218  Q
    |||| ||  || ||| |||||| |||||||||||||||||| |||||| |||||| ||| |||  ||||| |||||||||| ||||||| ||||||||||    
T  8535905 ttttcgagtctaaagtatcccacttgtgtgaatggtgcactacattggctaagatttgatggtctgcaaaggtcaatattgattttctgctttgaaagtg 8535806  T
Q  219 agaggttgcagtcatttccttctcctccacatgag-ttggaaatcataataatggaactcgtggtaacagccatgttagcatgggagaattaaaggg 314  Q
    ||| | || ||||||||||||||||||||||   | ||||||||||||||||||||  || | |||| || ||| ||||||||||||||||||||||    
T  8535805 agacgctgaagtcatttccttctcctccacagatgtttggaaatcataataatggatttcttagtaatagacatattagcatgggagaattaaaggg 8535709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 49 - 314
Target Start/End: Original strand, 9074358 - 9074621
Alignment:
Q  49 tgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtg 148  Q
    |||||||||| |||||||||||||||||||| ||   | ||||||||||||||||||||||||||||||||||| ||  ||  || |||||| |||||||    
T  9074358 tgtgatccttcagataaacacacttggaacaacaatattgagaaatgttgaagtggatcctcaaatttcttttttgagtctcgagtatcccacttgtgtg 9074457  T
Q  149 aatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccac 248  Q
    |||||||||||||||||||||||||||||   | |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  9074458 aatggtgcacttcattggataagatatgaaaatcagcaaaggtcaatattgtttttctgttttgaaagtgagaggttgcagtcatttccttctcctccgc 9074557  T
Q  249 atgag-ttggaaatcataataatggaactcgtggtaacagccatgttagcatgggagaattaaaggg 314  Q
    ||| | ||||||| ||||||| ||||| |  || |||||| ||   || ||||||||||||||||||    
T  9074558 atgtgtttggaaaccataatagtggaattgttgataacagaca---tatcatgggagaattaaaggg 9074621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 49 - 314
Target Start/End: Complemental strand, 8641854 - 8641585
Alignment:
Q  49 tgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtg 148  Q
    |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||| ||  |||||| |||||| |||||||    
T  8641854 tgtgatccttgagataaacacacttggagcaccatcatggagaaatgttgaagtggatcctcagatttctatttcgagtcttaagtatcccacttgtgtg 8641755  T
Q  149 aatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccac 248  Q
    ||| |||  |||||||| || | || |||||| ||||||| |||||||||   ||||||||| ||||||||||| ||| ||| |||||||||||||||||    
T  8641754 aatagtgttcttcattgaatcaaatttgagggggagcaaaggtcaatattatgtttctgtttggaaagtgagagattgaagttatttccttctcctccac 8641655  T
Q  249 atgag-ttggaaatc---ataataatggaactcgtggtaacagccatgttagcatgggagaattaaaggg 314  Q
    ||| | |||||||||   |||||||||||| || ||||||||| | | ||||||||||||| ||||||||    
T  8641654 atgtgtttggaaatcataataataatggaattcatggtaacaggcttattagcatgggagagttaaaggg 8641585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 59 - 273
Target Start/End: Original strand, 2844702 - 2844920
Alignment:
Q  59 gagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtgaatggtgcac 158  Q
    |||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||||||||| || ||||  |||||| |  ||||||||||| ||||    
T  2844702 gagatacacacgcttggaacaccatcatggagaaaggttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2844801  T
Q  159 ttcattggataagatatga---gggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatgag-t 254  Q
    |||||||||| | || |||   |||  | |||| ||||||||||  ||||  |||||||||||||||||||||||| ||||||||||||||||||| | |    
T  2844802 ttcattggattatatttgaaacggggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtt 2844901  T
Q  255 tggaaatcataataatgga 273  Q
    |||||||||| ||||||||    
T  2844902 tggaaatcatgataatgga 2844920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 59 - 273
Target Start/End: Original strand, 2874139 - 2874357
Alignment:
Q  59 gagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtgaatggtgcac 158  Q
    |||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||  |||||| |  ||||||||||| ||||    
T  2874139 gagatacacacgctcggaacaccatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2874238  T
Q  159 ttcattggataagatatgagg---gtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatgag-t 254  Q
    |||||||||| | || ||| |   |  | |||| ||||||||||  ||||  |||||||||||||||||||||||| ||||||||||||||||||| | |    
T  2874239 ttcattggattatatttgaagcttggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtt 2874338  T
Q  255 tggaaatcataataatgga 273  Q
    |||||||||| ||||||||    
T  2874339 tggaaatcatgataatgga 2874357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 273
Target Start/End: Original strand, 2856529 - 2856747
Alignment:
Q  59 gagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtgaatggtgcac 158  Q
    |||||| |||| || |||||| |||| ||||||||||||||||||||||||||||||||||||| || ||||  |||||| |  ||||||||||| ||||    
T  2856529 gagatacacacgctcggaacatcatcatggagaaatgttgaagtggatcctcaaatttcttttttgaagcttttgaatccaacatgtgtgaatggcgcac 2856628  T
Q  159 ttcattggataagatatgagg---gtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatgag-t 254  Q
    |||||||||| | || ||| |   |  | |||| ||||||||||  ||||  |||||||||||||||||||||||| ||||||||||||||||||| | |    
T  2856629 ttcattggattatatttgaagcttggcaacaaaagtcaatattgtgtttcaattttgaaagtgagaggttgcagtcgtttccttctcctccacatgtgtt 2856728  T
Q  255 tggaaatcataataatgga 273  Q
    |||||||||| ||||||||    
T  2856729 tggaaatcatgataatgga 2856747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 8644687 - 8644485
Alignment:
Q  54 tccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttg---------gatgcttaagaatcccatttg 144  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| || |         ||  ||| |  |||||| ||     
T  8644687 tccttgagataaacacacttggaacaccatcatggagaaatgctgaagtagatcctcaaatttctattggatcaggtttgagtcttcattatcccactta 8644588  T
Q  145 tgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcct 244  Q
    ||| |||||||| ||||||||||| |||| ||||| |||  ||| ||| ||||||  ||||||||||||||||||||||||||| |||||||||||||||    
T  8644587 tgttaatggtgcgcttcattggatcagatttgaggatgaagaaaggtctatattgtgtttctgttttgaaagtgagaggttgcaatcatttccttctcct 8644488  T
Q  245 cca 247  Q
    |||    
T  8644487 cca 8644485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 52 - 251
Target Start/End: Complemental strand, 9003932 - 9003735
Alignment:
Q  52 gatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtgaat 151  Q
    |||||||||||||  |||||| ||||||||||| ||||||||||||||||||||||||||| | ||| ||||||  |||||  |||| | ||||||||||    
T  9003932 gatccttgagata--cacactgggaacaccatcatggagaaatgttgaagtggatcctcaactgtctatttggagtcttaattatccgacttgtgtgaat 9003835  T
Q  152 ggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatg 251  Q
    || |||||||||||||| |||| |||   |  ||||||||||||||||  ||||  ||| |||| ||||||||| || || |||||||| ||||||||||    
T  9003834 ggcgcacttcattggatcagatttgattttctgcaaatgtcaatattgtgtttcaatttggaaaatgagaggttccaatcttttccttcccctccacatg 9003735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 250
Target Start/End: Original strand, 2904642 - 2904839
Alignment:
Q  56 cttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtgaatggtg 155  Q
    ||||||||| |||| || |||||| |||| ||||||||| ||||||||||||||||||||||||||| || ||||  ||||||||  ||||||||||| |    
T  2904642 cttgagatacacacgctcggaacaacatcatggagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaatggcg 2904741  T
Q  156 cacttcattggataaga---tatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacat 250  Q
     | | |||||||| | |    | || ||| | |||| ||||||||||  |||| ||||||||||||||||| |||| |||||||||||||||||||||    
T  2904742 gattacattggatcatagttgaagatggtcaacaaaagtcaatattgtgtttcagttttgaaagtgagaggatgcaatcatttccttctcctccacat 2904839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 8678293 - 8678087
Alignment:
Q  51 tgatccttgagataaacacacttggaa-caccatcctggagaaatgttgaagtggatcctcaaatttcttt---------ttggatgcttaagaatccca 140  Q
    |||||||||||||||||||| |||||| ||||||| |||||||||| |||||||||||||||||||||| |         || || |||     ||||||    
T  8678293 tgatccttgagataaacacaattggaaacaccatcatggagaaatgctgaagtggatcctcaaatttctattggatcagatttgaggctccgttatccca 8678194  T
Q  141 tttgtgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttc 240  Q
     |||| | |||||||| |||||||||||  ||| ||||||| |  ||||||| ||||||  ||||||||| |||| ||||| |||||| |||||||||||    
T  8678193 cttgtattaatggtgcgcttcattggatcggatttgagggtcaagaaatgtctatattgtgtttctgtttagaaactgagaagttgcaatcatttccttc 8678094  T
Q  241 tcctcca 247  Q
    |||||||    
T  8678093 tcctcca 8678087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 247
Target Start/End: Complemental strand, 8637342 - 8637140
Alignment:
Q  54 tccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggat----------gcttaagaatcccattt 143  Q
    ||||||||||| | ||||||||||||||||| |||||||||| |||||||||||| ||||||||| || ||||          ||||    |||||| ||    
T  8637342 tccttgagatatatacacttggaacaccatcatggagaaatgctgaagtggatccccaaatttctatt-ggatcaaatatatggcttcgttatcccactt 8637244  T
Q  144 gtgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcc 243  Q
    ||||||||||| |  |||||||||| |||| | ||||| |  ||| ||| ||||||  ||||||||| |||| |||||||||||| ||||||||||||||    
T  8637243 gtgtgaatggtacgattcattggatcagatttaagggtcaagaaaggtctatattgtgtttctgtttagaaaatgagaggttgcaatcatttccttctcc 8637144  T
Q  244 tcca 247  Q
    ||||    
T  8637143 tcca 8637140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 3380924 - 3380812
Alignment:
Q  56 cttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtgaatggtg 155  Q
    ||||||||| ||||  | |||||| |||| | ||||||| ||||||||||||||||||||||||||| || ||||  ||||||||  |||||||| || |    
T  3380924 cttgagatacacacgttcggaacaacatcatagagaaatcttgaagtggatcctcaaatttcttttttgaagcttttgaatcccacatgtgtgaacggcg 3380825  T
Q  156 cacttcattggat 168  Q
     ||||||||||||    
T  3380824 gacttcattggat 3380812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 8547750 - 8547857
Alignment:
Q  57 ttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtgaatggtgc 156  Q
    |||||||| ||||||| ||||||||| | |||||||||    ||||||||||||||||||||| ||     |||| | |||||| |||||||||| ||||    
T  8547750 ttgagatacacacactcggaacaccaacatggagaaat----aagtggatcctcaaatttcttcttcttatcttatgtatcccacttgtgtgaatcgtgc 8547845  T
Q  157 acttcattggat 168  Q
    ||||||||||||    
T  8547846 acttcattggat 8547857  T

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Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 314
Target Start/End: Original strand, 48361454 - 48361750
Alignment:
Q  19 taaacgtgccaatgcgttggagtttaagattgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttct 118  Q
    ||||||||||||||||| ||||||| ||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  48361454 taaacgtgccaatgcgtgggagtttgagcgtgtgatccttgagataaacacacttggaacaccatcctggaggaatgttgaagtggatcctcacatttct 48361553  T
Q  119 ttttggatgcttaagaatcccatttgtgtgaatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtg 218  Q
    |||| ||  ||  || |||||| |||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||| ||||||||||||||||||    
T  48361554 ttttcgagtctcgagtatcccacttgtgtgaatggtgcacttcattggataagatttgagggtcagcaaaggtcaatattgtttttctgttttgaaagtg 48361653  T
Q  219 agaggttgcagtcatttccttctcctccacatgag-ttggaaatcataataatggaactcgtggtaacagccatgttagcatgggagaattaaaggg 314  Q
    ||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||| ||| ||||||||||||||||||||||    
T  48361654 agagggtgcagtcatttccttctcctccacatgtgtttggaaatcataataatggaattcttggtaacaggcatattagcatgggagaattaaaggg 48361750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 53 - 251
Target Start/End: Complemental strand, 35780283 - 35780085
Alignment:
Q  53 atccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtgaatg 152  Q
    ||||| || ||||||||||||||| ||||||| ||||||| |||||||||||||||||  |||||| |||  |  |||||| |||||| |||||||||||    
T  35780283 atcctcgaaataaacacacttggagcaccatcatggagaactgttgaagtggatcctcgtatttctatttcaagccttaagtatcccacttgtgtgaatg 35780184  T
Q  153 gtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccacatg 251  Q
    |||  ||||| ||||| | || ||||||  | |||| |||||||||   ||| ||||||||| |||||||||||||| |||||||||||||||||||||    
T  35780183 gtgtgcttcactggatcaaatttgaggggcaacaaaagtcaatattatgtttttgttttgaaggtgagaggttgcagccatttccttctcctccacatg 35780085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 49 - 267
Target Start/End: Complemental strand, 9443572 - 9443353
Alignment:
Q  49 tgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtg 148  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||  || ||| |||||| |||||||    
T  9443572 tgtgatccttgagataaacacacttggaacaacatcctggagaaatgttgaagtggatcctcaaatttctttttcgagtctaaagtatcccacttgtgtg 9443473  T
Q  149 aatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccac 248  Q
    ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9443472 aatggtgcacttcattggataagatttgaggatgagcaaaggtcaatattggttttctgctttgaaagtgagaggttgcagtcatttccttctcctccac 9443373  T
Q  249 atgag-ttggaaatcataat 267  Q
    ||| | ||||||||||||||    
T  9443372 atgtgtttggaaatcataat 9443353  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 243
Target Start/End: Complemental strand, 16716833 - 16716647
Alignment:
Q  57 ttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatg-cttaagaatcccatttgtgtgaatggtg 155  Q
    |||||||| ||||||| ||||||||| | ||||||||| |  | ||||||||||||||||| ||||  ||| |||| |||||||| ||||||||||||||    
T  16716833 ttgagatacacacactcggaacaccaacatggagaaatatcaatgtggatcctcaaatttcattttc-atgtcttatgaatcccacttgtgtgaatggtg 16716735  T
Q  156 cacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcc 243  Q
    ||||||||||| | | || ||||||   | ||||||| ||||||  ||| |||||||||||||||| |||||| ||||||||||||||    
T  16716734 cacttcattggttcacatttgagggaagggaaatgtctatattgtgtttttgttttgaaagtgagaagttgcattcatttccttctcc 16716647  T

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Target: scaffold0627 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 59 - 243
Target Start/End: Complemental strand, 5130 - 4948
Alignment:
Q  59 gagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatg-cttaagaatcccatttgtgtgaatggtgca 157  Q
    |||||| ||||||| |||||| || | ||||||||| |  | ||||||||||||||||| ||||  ||| |||| |||||||| ||||||||||||||||    
T  5130 gagatacacacactcggaacatcaacatggagaaatatcaatgtggatcctcaaatttcattttc-atgtcttatgaatcccacttgtgtgaatggtgca 5032  T
Q  158 cttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcc 243  Q
    ||||||||||| |||| ||||||  || ||| |||  |||||  ||| |||||||| |||||||||||||| |||||||| |||||    
T  5031 cttcattggatcagatttgagggaaaggaaacgtc--tattgtgtttttgttttgacagtgagaggttgcaatcatttccctctcc 4948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 249
Target Start/End: Complemental strand, 5131241 - 5131041
Alignment:
Q  49 tgtgatccttgagataaacacacttggaacaccatcctggagaaatgttgaagtggatcctcaaatttctttttggatgcttaagaatcccatttgtgtg 148  Q
    |||||||||||||||| |||| |||||||||   || |||||||||||||||||||||| ||| |||||| ||| || |||| ||  ||| | |||||||    
T  5131241 tgtgatccttgagatacacactcttggaacattgtcatggagaaatgttgaagtggatcttcagatttctatttcgaggcttgagtgtcctacttgtgtg 5131142  T
Q  149 aatggtgcacttcattggataagatatgagggtgagcaaatgtcaatattggttttctgttttgaaagtgagaggttgcagtcatttccttctcctccac 248  Q
    ||||   ||||||||||||| | ||||||   |    ||| |||| | |||  |||| |||||||||||||||| ||||| ||||| |||||||||||||    
T  5131141 aatgacacacttcattggatcatatatgatcttagaaaaaggtcattgttgtgtttcagttttgaaagtgagagattgcaatcattcccttctcctccac 5131042  T
Q  249 a 249  Q
    |    
T  5131041 a 5131041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 26324139 - 26324187
Alignment:
Q  49 tgtgatccttgagataaacacacttggaacaccatcctggagaaatgtt 97  Q
    ||||||||||| ||| ||||||||||||||||| |||||||||||||||    
T  26324139 tgtgatccttgggatgaacacacttggaacaccgtcctggagaaatgtt 26324187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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