View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21514_low_8 (Length: 314)
Name: NF21514_low_8
Description: NF21514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21514_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 25 - 301
Target Start/End: Original strand, 2019183 - 2019460
Alignment:
| Q |
25 |
cagtatagaaatatagcctattgtagctgtgtatagcctgtagaataacagctctcacatctagctagtctaagagagatttctaactaacggaatcaaa |
124 |
Q |
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| T |
2019183 |
cagtatagaaatatagcctattgtagctgtgtatagcctgtagaataacagctctcacatctacctagtctaagagagatttctaactaactgaatcaaa |
2019282 |
T |
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| Q |
125 |
tcagttagagggatttgacctctataaataccaatcatcctgtaatcattactaaacgacgatcaatgaagaatattcaaattccc-ctcatattctctt |
223 |
Q |
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| T |
2019283 |
tcagttagagggatttgacctctataaataccaatcatcctgtaatcattactaaacgttgatcaatgaagaatattcagattccctctcatattctctt |
2019382 |
T |
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| Q |
224 |
tcatatctatttctcaaagataacttgggtttcaattatatggatcattgattatttaattgatactggtgttccttc |
301 |
Q |
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| T |
2019383 |
tcatatctatttctcaaagataacttgggtttcaattatatggatcattgattatttaattgatactggtgttccttc |
2019460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 1990425 - 1990494
Alignment:
| Q |
233 |
tttctcaaagataacttgggtttcaattatatggatcattgattatttaa-ttgatactggtgttccttc |
301 |
Q |
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| T |
1990425 |
tttctcaaagatagcttaggtttctactatattgaacatcgattatttaacttgatactggtgttccttc |
1990494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 2021893 - 2021940
Alignment:
| Q |
108 |
taactaacggaatcaaatcagttagagggatttgacctctataaatac |
155 |
Q |
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| T |
2021893 |
taactaactgaatcaaataagttagagggatttgacctttatagatac |
2021940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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