View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21514_low_9 (Length: 287)

Name: NF21514_low_9
Description: NF21514
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21514_low_9
NF21514_low_9
[»] chr4 (9 HSPs)
chr4 (36-270)||(24887303-24887559)
chr4 (40-246)||(37369438-37369663)
chr4 (162-246)||(28099690-28099775)
chr4 (156-246)||(5104939-5105030)
chr4 (156-246)||(7853815-7853906)
chr4 (156-208)||(16019860-16019912)
chr4 (187-250)||(1848389-1848453)
chr4 (156-246)||(21309046-21309137)
chr4 (164-246)||(42787201-42787284)
[»] chr6 (3 HSPs)
chr6 (41-246)||(30878666-30878878)
chr6 (156-246)||(23929312-23929403)
chr6 (156-236)||(8634701-8634782)
[»] chr1 (6 HSPs)
chr1 (41-246)||(1923102-1923314)
chr1 (156-248)||(42658586-42658679)
chr1 (156-246)||(27199076-27199163)
chr1 (73-162)||(42658484-42658573)
chr1 (164-246)||(956077-956160)
chr1 (156-246)||(19350245-19350336)
[»] chr2 (11 HSPs)
chr2 (156-246)||(20156350-20156441)
chr2 (156-246)||(1188682-1188773)
chr2 (156-246)||(17881549-17881639)
chr2 (40-157)||(37982450-37982568)
chr2 (156-246)||(34027523-34027614)
chr2 (182-246)||(37982569-37982633)
chr2 (156-211)||(21988254-21988309)
chr2 (164-246)||(44766463-44766546)
chr2 (116-197)||(10125049-10125130)
chr2 (164-246)||(16270358-16270442)
chr2 (164-247)||(31170100-31170184)
[»] scaffold0287 (1 HSPs)
scaffold0287 (156-246)||(10869-10960)
[»] chr7 (10 HSPs)
chr7 (156-246)||(3635125-3635216)
chr7 (156-246)||(40098475-40098565)
chr7 (156-246)||(9824684-9824773)
chr7 (156-246)||(10726609-10726698)
chr7 (105-230)||(43863713-43863839)
chr7 (156-198)||(48152387-48152429)
chr7 (164-246)||(977379-977462)
chr7 (164-246)||(47879709-47879792)
chr7 (164-246)||(47914787-47914870)
chr7 (41-107)||(48999535-48999601)
[»] chr5 (8 HSPs)
chr5 (73-246)||(2004387-2004559)
chr5 (51-246)||(28593006-28593221)
chr5 (73-198)||(2003296-2003419)
chr5 (156-246)||(9688375-9688466)
chr5 (156-232)||(28346554-28346630)
chr5 (156-234)||(9839993-9840072)
chr5 (159-246)||(30582000-30582087)
chr5 (187-246)||(39853381-39853440)
[»] chr8 (3 HSPs)
chr8 (40-162)||(24319082-24319203)
chr8 (164-246)||(10391700-10391783)
chr8 (124-180)||(23609520-23609576)
[»] chr3 (11 HSPs)
chr3 (156-246)||(7319078-7319168)
chr3 (156-246)||(46749968-46750058)
chr3 (101-243)||(10055071-10055212)
chr3 (156-240)||(45925796-45925883)
chr3 (164-246)||(33807169-33807252)
chr3 (156-246)||(45135697-45135788)
chr3 (43-121)||(45925905-45925984)
chr3 (117-162)||(46749910-46749955)
chr3 (40-94)||(10055236-10055291)
chr3 (164-246)||(19254493-19254576)
chr3 (156-246)||(46174730-46174821)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 36 - 270
Target Start/End: Complemental strand, 24887559 - 24887303
Alignment:
Q  36 catttcataagcatttagaaaaaacacatttgatttgttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaa 135  Q
    |||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||    
T  24887559 catttcataagcatctagaaaaaacacaattgatttgttgatataaatcctttaaaatcctgatggtcttttcaaaacttataaaagcttaggatataaa 24887460  T
Q  136 tcacttgaaattcaaattacaaatc-------------------ttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatat 216  Q
    || |||||||| |||||||||||||                   |||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||    
T  24887459 tcccttgaaatccaaattacaaatcttaagtatcttttaaaatcttaaaagtcattaaaatcttacatagtcttttaaaatctactaaactttttcatat 24887360  T
Q  217 aaaattatcttttaaaattctaatccaataatacacc---ccgaataacttatatct 270  Q
    |||||||||||||||||||||||||||||||||| ||   | |||||||||||||||    
T  24887359 aaaattatcttttaaaattctaatccaataataccccctgctgaataacttatatct 24887303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 37369663 - 37369438
Alignment:
Q  40 tcataagcatttagaaaaaacacatttgatttgttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaatcac 139  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||  || | ||||||| |||  |||||||| || || ||||||||| |    
T  37369663 tcataagcatctagaaaaaacacaattggtttgttgatataaatcctttgaaattttgatagtcttttaaaatcttataaaatctcagaatataaatccc 37369564  T
Q  140 ttgaaattcaaattacaaatcttaa-------------------aagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaa 220  Q
    ||||||| |||||||||||||||||                   ||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  37369563 ttgaaatccaaattacaaatcttaagaatcttttaaaatcttaaaagtcattaaaatcttgcatagtcttttaaaatccactagactttttcatgtaaaa 37369464  T
Q  221 ttatcttttaaaattctaatccaata 246  Q
    || | ||||||||| |||||||||||    
T  37369463 ttgttttttaaaatcctaatccaata 37369438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 162 - 246
Target Start/End: Complemental strand, 28099775 - 28099690
Alignment:
Q  162 taaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||  |||||| ||||||||||| ||||| |||||    
T  28099775 taaaagtcattaaaatcttgcataatcttttaaaatttattagactttttcatacaaaaattgtcttttaaaatcctaattcaata 28099690  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 5104939 - 5105030
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagac-tttttcatataaaattatcttttaaaattctaatccaata 246  Q
    ||||||||||||||||||||||||| || | |||||||||||| || |||| ||||| ||| |||||| ||||||||||| |||||||||||    
T  5104939 aaatcttaaaagtcattaaaatctttcaaagtcttttaaaatccacaagactttttttatacaaaattgtcttttaaaatcctaatccaata 5105030  T

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Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 7853906 - 7853815
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcat-ataaaattatcttttaaaattctaatccaata 246  Q
    |||||||||||||||||||||| ||||||| |||||||||||  |||||| ||||||||  ||||||| |||||||||||  ||||||||||    
T  7853906 aaatcttaaaagtcattaaaattttgcatattcttttaaaattcactagattttttcatgctaaaattgtcttttaaaatattaatccaata 7853815  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 16019860 - 16019912
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactt 208  Q
    |||||||||||||||| ||||||||||| | |||||||||||| |||||||||    
T  16019860 aaatcttaaaagtcatgaaaatcttgcaaagtcttttaaaatccactagactt 16019912  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 1848453 - 1848389
Alignment:
Q  187 tcttttaaaatctactagactttttcatataaaa-ttatcttttaaaattctaatccaataatac 250  Q
    ||||||||| || |||||||||||||||| |||| |||||||| |||||  ||||||||||||||    
T  1848453 tcttttaaagtccactagactttttcatacaaaacttatctttaaaaatcttaatccaataatac 1848389  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 21309137 - 21309046
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaa-ttatcttttaaaattctaatccaata 246  Q
    |||||||||||||||||||||| || ||   |||||||||| ||||  || ||||| | |||||| ||||||||||||||  ||||||||||    
T  21309137 aaatcttaaaagtcattaaaattttacaatgtcttttaaaacctacatgatttttttaaataaaatttatcttttaaaatcttaatccaata 21309046  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 42787201 - 42787284
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    |||||||| |||||  |||| ||||||||||||||| | ||||||||| | |  |||||| || ||||||||||||||||||||    
T  42787201 aaagtcataaaaattctgcaaaatcttttaaaatcttcaagacttttttaaacaaaaattgtcctttaaaattctaatccaata 42787284  T

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Target: chr6 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 41 - 246
Target Start/End: Original strand, 30878666 - 30878878
Alignment:
Q  41 cataagcatttagaaaaaacacatttgatttgttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaatcact 140  Q
    ||||||||||||| ||||||||| || | || ||||||||| ||| |||||||| || | ||||||| |||  |||||||| |||| |||||||||| ||    
T  30878666 cataagcatttaggaaaaacacaattaacttcttgatataa-tccattgaaatcttgatagtcttttaaaatcttataaaatcttaagatataaatccct 30878764  T
Q  141 tgaaattca----aat---tacaaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaatta-tcttttaaa 232  Q
    |||||| |     |||   |  ||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||| || |||||||||    
T  30878765 tgaaatccttgagaatcttttaaaatcctaaaagtcattaaaatcttgcataatcttttaatatccactagactttttcatacaaaaatagtcttttaaa 30878864  T
Q  233 attctaatccaata 246  Q
    ||||||||| ||||    
T  30878865 attctaatcaaata 30878878  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 23929312 - 23929403
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    ||||||||||||| ||||||||||| || | |||||||||||  ||  |||||||| |||  |||||| ||||||||||| |||||||||||    
T  23929312 aaatcttaaaagttattaaaatctttcaaagtcttttaaaattcacaggacttttttatacaaaaattgtcttttaaaatcctaatccaata 23929403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 8634782 - 8634701
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattc 236  Q
    ||||||||||||||||| ||||||| || | |||||||||||  || ||||||||| |||  |||| | |||||||||||||    
T  8634782 aaatcttaaaagtcattcaaatctttcaaagtcttttaaaattcacaagacttttttatagaaaaaatttcttttaaaattc 8634701  T

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Target: chr1 (Bit Score: 67; Significance: 8e-30; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 1923314 - 1923102
Alignment:
Q  41 cataagcatttagaaaaaacacatttgatttgttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaatcact 140  Q
    ||||||||| ||| ||||||||| || | || ||||||||| ||| |||||||| || | ||||||| |||  |||||||| |||| |||||||||| ||    
T  1923314 cataagcatctaggaaaaacacaattaacttcttgatataa-tccattgaaatcttgatagtcttttaaaatcttataaaatcttaagatataaatccct 1923216  T
Q  141 tgaaattca----aat---tacaaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaatta-tcttttaaa 232  Q
    |||||| |     |||   |  ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| || |||||||||    
T  1923215 tgaaatccttgagaatcttttaaaatcctaaaagtcattaaaatcttgcataatcttttaaaatccactagactttttcatacaaaaatagtcttttaaa 1923116  T
Q  233 attctaatccaata 246  Q
    || |||||||||||    
T  1923115 atcctaatccaata 1923102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 42658586 - 42658679
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcat-ataaaattatcttttaaaattctaatccaataat 248  Q
    ||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||   |||||| ||||||||||| |||||||||||||    
T  42658586 aaatcttaaaagtcattgaaatcttgcatagtcttttaaaatccactagactttttcatgcaaaaattgtcttttaaaatcctaatccaataat 42658679  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 27199076 - 27199163
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaattatcttttaaaattctaatccaata 246  Q
    |||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||| |||| ||   ||||||||| |||||||||||    
T  27199076 aaatcttaaaagtcattaaaatcttgcatagtctttcaaaatccactagactttttcatgtaaattt---ttttaaaatcctaatccaata 27199163  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 73 - 162
Target Start/End: Original strand, 42658484 - 42658573
Alignment:
Q  73 ttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaatcacttgaaattcaaattacaaatctt 162  Q
    |||||||||||||||||||||| || | |||| || |||  |||||||| ||||| |||||||||  ||||||| |||||||||||||||    
T  42658484 ttgatataaatcctttgaaatcttgatagtctcttaaaatcttataaaatcttagtatataaatccattgaaatccaaattacaaatctt 42658573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 956077 - 956160
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaa-ttatcttttaaaattctaatccaata 246  Q
    |||||||| |||||| |||| | ||||||||||||  | ||||||||| | | |||| || |||||||||||||||||||||||    
T  956077 aaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaaattctaatccaata 956160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 19350245 - 19350336
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcat--ataaaattatcttttaaaattctaatccaata 246  Q
    ||||||||||| |||||||||| ||| ||| |||||||||| |||| ||| || |||||  | |||||| ||||||||||| |||||| ||||    
T  19350245 aaatcttaaaaatcattaaaattttgaatagtcttttaaaacctacaagatttattcatgcaaaaaatt-tcttttaaaatcctaatctaata 19350336  T

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Target: chr2 (Bit Score: 64; Significance: 5e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 20156441 - 20156350
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaatta-tcttttaaaattctaatccaata 246  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||    
T  20156441 aaatcctaaaagtcattaaaatcttacataatcttttaaaatctactagactttttcatacaaaaatagtcttttaaaatcctaatccaata 20156350  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 1188773 - 1188682
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    ||||||||||||||||| ||||||||||||||||||||||||  | ||||||||||||||  |||||| ||||||||||| |||||||||||    
T  1188773 aaatcttaaaagtcattcaaatcttgcataatcttttaaaattcattagactttttcatacaaaaattttcttttaaaatcctaatccaata 1188682  T

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Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 17881639 - 17881549
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaattatcttttaaaattctaatccaata 246  Q
    ||||||||||| |  |||||||||||||||||||||||||||  |||||||||||||||  ||||| |||||||||||| |||||||||||    
T  17881639 aaatcttaaaaattgttaaaatcttgcataatcttttaaaatacactagactttttcatcaaaaatgatcttttaaaatcctaatccaata 17881549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 157
Target Start/End: Original strand, 37982450 - 37982568
Alignment:
Q  40 tcataagcatttagaaaaaa-cacatttgatttgttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaatca 138  Q
    ||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||| ||| | ||||||| ||   |||||||| ||||||||||||||      
T  37982450 tcatatgcatttagaaaaaaacacaattggtttgttgatataaatcctttgaaattctgatagtcttttaaagtcttataaaatcttaggatataaattc 37982549  T
Q  139 cttgaaattcaaattacaa 157  Q
    |||||||| ||||||||||    
T  37982550 cttgaaatccaaattacaa 37982568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 34027614 - 34027523
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    ||||| ||||||||||||||||||||||||||||||||||||  |||||| |||||||||  ||||| |||||||||||| |||||| ||||    
T  34027614 aaatcctaaaagtcattaaaatcttgcataatcttttaaaattcactagattttttcatacaaaaataatcttttaaaatcctaatcaaata 34027523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 182 - 246
Target Start/End: Original strand, 37982569 - 37982633
Alignment:
Q  182 cataatcttttaaaatctactagactttttcatataaaattatcttttaaaattctaatccaata 246  Q
    |||| |||||||||||| |||||||||||||||  |||||| ||||||||||| ||||| |||||    
T  37982569 catagtcttttaaaatccactagactttttcatgaaaaattgtcttttaaaatcctaattcaata 37982633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 21988254 - 21988309
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagacttttt 211  Q
    ||||||||||||||||||||||||| || | |||||||||||| || | |||||||    
T  21988254 aaatcttaaaagtcattaaaatctttcaaagtcttttaaaatccacaacacttttt 21988309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 44766463 - 44766546
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    |||||||| ||||||||||| ||||||||||||||  | ||||||||| | |  |||||| ||||||||||| ||||| |||||    
T  44766463 aaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagacttttttaaacaaaaattgtcttttaaaatcctaattcaata 44766546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 197
Target Start/End: Complemental strand, 10125130 - 10125049
Alignment:
Q  116 ataaaagcttaggatataaatcacttgaaattcaaattacaaatcttaaaagtcattaaaatcttgcataatcttttaaaat 197  Q
    |||||| |||| ||| ||||||  ||||||| ||||||  ||||| | ||||||||||||||| | || |||||||||||||    
T  10125130 ataaaatcttatgatgtaaatccattgaaatccaaattgaaaatcatgaaagtcattaaaatcctacaaaatcttttaaaat 10125049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 16270358 - 16270442
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagacttttt--catataaaattatcttttaaaattctaatccaata 246  Q
    |||||||| ||||||||||| | ||||||||||||  | |||||||||   | | ||||||||| |||||||| |||||||||||    
T  16270358 aaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaaaaaaaaattatcctttaaaatcctaatccaata 16270442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 247
Target Start/End: Complemental strand, 31170184 - 31170100
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaataa 247  Q
    |||||||| ||||||||||| | ||||||||||||  | ||||||||| | |  |||||| || |||||||| ||||||||||||    
T  31170184 aaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagactttttaaaacaaaaattgtcctttaaaatcctaatccaataa 31170100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0287 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 10960 - 10869
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatat-aaaattatcttttaaaattctaatccaata 246  Q
    ||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  10960 aaatcctaaaagtcattacaatcttgcataatctttttaaatccactagactttttcatataaaaattgtcttttaaaatcctaatccaata 10869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 3635125 - 3635216
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatat-aaaattatcttttaaaattctaatccaata 246  Q
    ||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||| |||||||||||    
T  3635125 aaatcctaaaagtcattacaatcttgcataatctttttaaatccactagactttttcatataaaaattgtcttttaaaatcctaatccaata 3635216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 40098475 - 40098565
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    ||||| ||||||||||||||||||||||||||||||||||||  ||| ||||||||||||  ||||| |||||||||||| |||||| ||||    
T  40098475 aaatcctaaaagtcattaaaatcttgcataatcttttaaaattcact-gactttttcatacaaaaataatcttttaaaatcctaatcaaata 40098565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 9824773 - 9824684
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaattatcttttaaaattctaatccaata 246  Q
    ||||||||||| ||||| ||||||| |||| |||||||||||  |||| |||||||||||||||| | | |||||||||||||||||||||    
T  9824773 aaatcttaaaactcattgaaatcttacatattcttttaaaattcactaaactttttcatataaaaat-tattttaaaattctaatccaata 9824684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 10726698 - 10726609
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaattatcttttaaaattctaatccaata 246  Q
    ||||||||||| ||||| ||||||| |||| |||||||||||  |||| |||||||||||||||| | | |||||||||||||||||||||    
T  10726698 aaatcttaaaactcattgaaatcttacatattcttttaaaattcactaaactttttcatataaaaat-tattttaaaattctaatccaata 10726609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 43863713 - 43863839
Alignment:
Q  105 tttcaaaagttataaaagcttaggatataaatcacttgaaattcaaattacaaatcttaaaagtcattaaaatcttgca-taatcttttaaaatctacta 203  Q
    ||||||| ||||||||| |||| ||  ||||||| |||||||  |||||  ||||||| | |||||||||||||||||| |  | | |||||||| || |    
T  43863713 tttcaaatgttataaaatcttacgaagtaaatcaattgaaatctaaattttaaatcttgatagtcattaaaatcttgcagttttttcttaaaatccacaa 43863812  T
Q  204 gactttttcatataaaattatctttta 230  Q
    |||||||||| | ||||||||| ||||    
T  43863813 gactttttcagaaaaaattatccttta 43863839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 198
Target Start/End: Complemental strand, 48152429 - 48152387
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatc 198  Q
    ||||||||||||| ||||||||||||||||||| |||||||||    
T  48152429 aaatcttaaaagtaattaaaatcttgcataatcatttaaaatc 48152387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 977379 - 977462
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    |||||||| ||||||||||| | ||||||||||||| | ||||||||| | |  |||||| ||||||||||| |||| ||||||    
T  977379 aaagtcatcaaaatcttgcaaagtcttttaaaatcttcaagacttttttaaacaaaaattgtcttttaaaatcctaaaccaata 977462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 47879709 - 47879792
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaa-ttatcttttaaaattctaatccaata 246  Q
    |||||||| |||||| |||| | ||||||||||||  | ||||||||| | | |||| |||||||||||||| |||||||||||    
T  47879709 aaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaata 47879792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 47914787 - 47914870
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaa-ttatcttttaaaattctaatccaata 246  Q
    |||||||| |||||| |||| | ||||||||||||  | ||||||||| | | |||| |||||||||||||| |||||||||||    
T  47914787 aaagtcatcaaaatcctgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcttttaaaatcctaatccaata 47914870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 107
Target Start/End: Original strand, 48999535 - 48999601
Alignment:
Q  41 cataagcatttagaaaaaacacatttgatttgttgatataaatcctttgaaatcctggtggtctttt 107  Q
    ||||||||  ||| ||||||||| || | || |||||||||||||||||||||| ||||||| ||||    
T  48999535 cataagcacctaggaaaaacacaattaaattattgatataaatcctttgaaatcttggtggtgtttt 48999601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 73 - 246
Target Start/End: Original strand, 2004387 - 2004559
Alignment:
Q  73 ttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaatcacttgaaattcaaattacaaatcttaaaagtcatt 172  Q
    |||||||||||| ||||||||| || | || |||| ||    |||||||| ||| ||||||||||| ||||||||||||||   ||||||||||||||||    
T  2004387 ttgatataaatcatttgaaatcttgatagttttttaaattcgtataaaagattatgatataaatcatttgaaattcaaattt--aatcttaaaagtcatt 2004484  T
Q  173 aaaatcttgcataatcttttaaaatctactagactttttcatataaa-attatcttttaaaattctaatccaata 246  Q
    ||||| |||  || |||||||||||| |||||||||||||||  ||| ||| ||||||||||| |||||| ||||    
T  2004485 aaaattttgtgtagtcttttaaaatccactagactttttcattcaaatattttcttttaaaatcctaatcgaata 2004559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 246
Target Start/End: Complemental strand, 28593221 - 28593006
Alignment:
Q  51 tagaaaaaacacatttgatttgttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaatcacttgaaattcaa 150  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||| |||  |||||||| || |  |||||||||  ||||||| |||    
T  28593221 tagaaaaaacacaattgacttgttgatataaatcctttgaaatcctgatagtcttttaaaatcttataaaatctcataatataaatcctttgaaatccaa 28593122  T
Q  151 attacaaa-------------------tcttaaaagtcattaaaatcttgcataatcttttaaaatctactaga-ctttttcatataaaattatctttta 230  Q
    ||||||||                   |||||||||||||||||||||| |||| | |||||||||| || ||| ||||||||| ||||||| |||||||    
T  28593121 attacaaatcttgagaatcttttaaaatcttaaaagtcattaaaatctttcatagtattttaaaatccacaagacctttttcatgtaaaattgtctttta 28593022  T
Q  231 aaattctaatccaata 246  Q
    |||| |||||||||||    
T  28593021 aaatcctaatccaata 28593006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 2003296 - 2003419
Alignment:
Q  73 ttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaatcacttgaaattcaaattacaaatcttaaaagtcatt 172  Q
    |||||||||||| ||||||||| || |  | |||| ||   ||||||||||||| ||||||||| | ||||||||||||||   ||||||||||||||||    
T  2003296 ttgatataaatcatttgaaatcttgataattttttaaattcttataaaagcttatgatataaataatttgaaattcaaattc--aatcttaaaagtcatt 2003393  T
Q  173 aaaatcttgcataatcttttaaaatc 198  Q
    ||||||||| ||| ||||||||||||    
T  2003394 aaaatcttgtatagtcttttaaaatc 2003419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 9688466 - 9688375
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatat-aaaattatcttttaaaattctaatccaata 246  Q
    |||||||||||||||| | |||||| || |||||||||||||| |||| |||||||||| | |||||| |||| |||| | |||||||||||    
T  9688466 aaatcttaaaagtcatgacaatcttacaaaatcttttaaaatccactaaactttttcatgtaaaaattgtcttctaaattcctaatccaata 9688375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 232
Target Start/End: Complemental strand, 28346630 - 28346554
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaa 232  Q
    ||||||||||||||||||||||||||||| |   ||||||||| || ||||||||| |||  ||||||||||||||||    
T  28346630 aaatcttaaaagtcattaaaatcttgcat-agagtttaaaatccacaagacttttttatacaaaaattatcttttaaa 28346554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 9840072 - 9839993
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaat 234  Q
    ||||||||||||||||| ||||||| || | | |||||||||| || ||||||||| |||  |||||| |||||||||||    
T  9840072 aaatcttaaaagtcattcaaatctttcaaagttttttaaaatccacaagacttttttatacaaaaattgtcttttaaaat 9839993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 30582087 - 30582000
Alignment:
Q  159 tcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    |||||||| ||| ||||||  || ||| |||||||||||| || |||||||||||||  |||||| |||||| |||||||||| |||||    
T  30582087 tcttaaaaatcactaaaattatgtatagtcttttaaaatccacaagactttttcatacaaaaattgtctttt-aaattctaattcaata 30582000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 246
Target Start/End: Original strand, 39853381 - 39853440
Alignment:
Q  187 tcttttaaaatctactagactttttcatataaaatta-tcttttaaaattctaatccaata 246  Q
    ||||||||||||||  ||||||||| |||| ||| || |||||||||||||||||||||||    
T  39853381 tcttttaaaatctaaaagacttttt-atattaaaatagtcttttaaaattctaatccaata 39853440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 40 - 162
Target Start/End: Original strand, 24319082 - 24319203
Alignment:
Q  40 tcataagcatttagaaaaaacacatttgatttgttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaagcttaggatataaatcac 139  Q
    |||||||||| || |||||||||| |||| ||||| ||| || ||||||||||||||| | ||||||| |||  |||||||| ||||||||||| ||  |    
T  24319082 tcataagcatcta-aaaaaacacaattgacttgttcatacaagtcctttgaaatcctgctagtcttttaaaatattataaaatcttaggatatatatttc 24319180  T
Q  140 ttgaaattcaaattacaaatctt 162  Q
    ||||||| |||||||||||||||    
T  24319181 ttgaaatccaaattacaaatctt 24319203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 10391783 - 10391700
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaa-ttatcttttaaaattctaatccaata 246  Q
    |||||||| ||||||||||| | ||||||||||||  | ||||||||| | | |||| ||||| ||||||||||||||||||||    
T  10391783 aaagtcatcaaaatcttgcaaagtcttttaaaatcctcaagacttttttaaacaaaaattatcctttaaaattctaatccaata 10391700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 23609520 - 23609576
Alignment:
Q  124 ttaggatataaatcacttgaaattcaaattacaaatcttaaaagtcattaaaatctt 180  Q
    |||||||||||||| |||||||| ||||||||||| ||| ||| |  ||||||||||    
T  23609520 ttaggatataaatcccttgaaatccaaattacaaaccttgaaaatatttaaaatctt 23609576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 7319078 - 7319168
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaattatcttttaaaattctaatccaata 246  Q
    ||||||||||||||||||||||||| || | |||||||||||| || ||| ||||| ||| |||||| ||||||||||| |||||||||||    
T  7319078 aaatcttaaaagtcattaaaatctttcaaagtcttttaaaatccacaagatttttttatacaaaattgtcttttaaaatcctaatccaata 7319168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 46749968 - 46750058
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatataaaattatcttttaaaattctaatccaata 246  Q
    ||||| |||||||||||||||||||  |||||||||||||||| ||| |||||||||||  |||||| |||||||||||  ||||||||||    
T  46749968 aaatcgtaaaagtcattaaaatcttcaataatcttttaaaatccactggactttttcatcaaaaattgtcttttaaaatcgtaatccaata 46750058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 243
Target Start/End: Complemental strand, 10055212 - 10055071
Alignment:
Q  101 gtcttttcaaaagttataaaagcttaggatataaatcacttgaaattcaaattacaaatcttaaaagtc-attaaaatcttgcataatcttttaaaatct 199  Q
    ||||||| |||  |||||||| ||| | |||||||||  ||||||| ||||||||||||||| | | ||  |||||||||| |||| ||||||||||||     
T  10055212 gtcttttaaaatcttataaaatctttgaatataaatcctttgaaatccaaattacaaatcttgagaatcttttaaaatcttacatagtcttttaaaatcc 10055113  T
Q  200 actagactttttcatataaaattatcttttaaaattctaatcca 243  Q
    |||||| |||||||||  ||||||||||||||||| ||||||||    
T  10055112 actaga-tttttcata-caaattatcttttaaaatcctaatcca 10055071  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 45925883 - 45925796
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagac---tttttcatataaaattatcttttaaaattctaat 240  Q
    ||||||||||||| |||||||||||||| ||| |||||||||| || ||||   ||||| || ||||||| ||||||||||| |||||    
T  45925883 aaatcttaaaagttattaaaatcttgcacaatattttaaaatccacaagactttttttttatgtaaaattgtcttttaaaatcctaat 45925796  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 246
Target Start/End: Complemental strand, 33807252 - 33807169
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcatat-aaaattatcttttaaaattctaatccaata 246  Q
    |||||||| ||||||||||| ||||||||||||||  | ||||||||| | || |||||| || |||||||| |||||||||||    
T  33807252 aaagtcatcaaaatcttgcaaaatcttttaaaatcctcaagacttttttaaataaaaattgtcctttaaaatcctaatccaata 33807169  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 45135697 - 45135788
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagac-tttttcatataaaattatcttttaaaattctaatccaata 246  Q
    |||| |||||||||||||||||||| || | |||||||||||  || |||| ||||| ||| |||||| ||||||||||| |||||| ||||    
T  45135697 aaattttaaaagtcattaaaatctttcaaagtcttttaaaatacacaagactttttttatacaaaattgtcttttaaaatcctaatcaaata 45135788  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 121
Target Start/End: Complemental strand, 45925984 - 45925905
Alignment:
Q  43 taagcatttagaaaaaa-cacatttgatttgttgatataaatcctttgaaatcctggtggtcttttcaaaagttataaaa 121  Q
    ||||||||||||||||| |||| ||| ||| ||||||||||||||||||||| ||| | ||||||| |||  ||||||||    
T  45925984 taagcatttagaaaaaaacacaattggtttattgatataaatcctttgaaattctgatagtcttttaaaatcttataaaa 45925905  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 46749910 - 46749955
Alignment:
Q  117 taaaagcttaggatataaatcacttgaaattcaaattacaaatctt 162  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||||    
T  46749910 taaaatcttaggatataaatcccttgaaatccaaattacaaatctt 46749955  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 10055291 - 10055236
Alignment:
Q  40 tcataagcatttagaa-aaaacacatttgatttgttgatataaatcctttgaaatc 94  Q
    |||||||||| ||||| |||||||| |||  |||||||||||||||||||||||||    
T  10055291 tcataagcatctagaagaaaacacaattggcttgttgatataaatcctttgaaatc 10055236  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 246
Target Start/End: Original strand, 19254493 - 19254576
Alignment:
Q  164 aaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    |||||||| ||||||||||| | ||||||||||||| | ||||||||| | |  |||||| || |||||||| |||||||||||    
T  19254493 aaagtcatcaaaatcttgcaaagtcttttaaaatcttcaagacttttttaaacaaaaattgtcctttaaaatcctaatccaata 19254576  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 46174730 - 46174821
Alignment:
Q  156 aaatcttaaaagtcattaaaatcttgcataatcttttaaaatctactagactttttcata-taaaattatcttttaaaattctaatccaata 246  Q
    |||||||||||||| |||||||| |||| |||||||||||||   | | ||||||| | |  |||||||||||||||||| |||||| ||||    
T  46174730 aaatcttaaaagtccttaaaatcatgcaaaatcttttaaaattctcaaaacttttttaaacaaaaattatcttttaaaatcctaatcgaata 46174821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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