View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21515_high_1 (Length: 474)
Name: NF21515_high_1
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 126 - 463
Target Start/End: Original strand, 47624542 - 47624879
Alignment:
| Q |
126 |
attcatcggtcttcaaatgttaatcaagctttgttaagccgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactac |
225 |
Q |
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| T |
47624542 |
attcatcggtcttcaaatgttaatcaagctttgttaagctgctttatgtttgtcacataaaatctgactagaattgcatctacacataactcaccactac |
47624641 |
T |
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| Q |
226 |
gaatcattcatgggataatgcagtaactgatatatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaa |
325 |
Q |
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| T |
47624642 |
gaatcattcatgggataatgcagtaactgatatatggtacctgtgtggcaatctgaacttgagggtcaggatctgtaaatgtacgctcaggtattttcaa |
47624741 |
T |
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| Q |
326 |
catatcattaactaaatgcttgtttttcaaagcatgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactatct |
425 |
Q |
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| T |
47624742 |
catatcattaactaaatgcttgtttttcaaagcatgggacccgagcattcgaataaaccatccccatgcttgaacagcctgaatcttcgtaccactatct |
47624841 |
T |
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| Q |
426 |
agcaaatccttcatcccattgagtaattttatcttcat |
463 |
Q |
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| T |
47624842 |
agcaaatccttcatcccattgagcaattttatcttcat |
47624879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 47624443 - 47624312
Alignment:
| Q |
1 |
tgtgactgttcaagtgtcttacgtgcaggttgcctgggaaggtcttatcgatgcccttatttctcatccaatattggtttcagagaaaaagacaccatct |
100 |
Q |
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| T |
47624443 |
tgtgactgttcaagtgtcttaagtgcaggttgcctgggaaggtcttatcgatgcccttatttctcatccaatattggtttcagagaaaaagacaccgtct |
47624344 |
T |
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| Q |
101 |
aaggatacttctctccagaaacagcattcatc |
132 |
Q |
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| T |
47624343 |
aaggatacttctctccagaaacagcattcatc |
47624312 |
T |
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