View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21515_high_4 (Length: 382)
Name: NF21515_high_4
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 5299568 - 5299922
Alignment:
| Q |
18 |
gaaccaaaggctcaagcctgctccaaactccacttgcgtgccatacgttagccgctgtcaaacaatggaagaaaaggtggtagctgttctaaattgcctc |
117 |
Q |
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| T |
5299568 |
gaaccaaaggctcaagcctgctccaaactccacttgcgcgccatacgttagccgctgtcaaacaatggaagaaaaggtggtagctgttctaaattgcctc |
5299667 |
T |
|
| Q |
118 |
attacaaatcacacaagttaagggacatgtgacacctctactgtatctcgaacaaaattatatcgacggaggaatcatgtggggtgaaaatagacaataa |
217 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5299668 |
attacaaatcatacaagttaagggacatgtgacacctctactgtatctcgaacaaaattatattgacggaggaatcatgtggggtgaaaatagacaataa |
5299767 |
T |
|
| Q |
218 |
tttcaactaatttgtgacacctctattatactcttttccttgctctacaaatcaacaaaaggaaacaatcatttgtatcaatgtattgatagttgcacat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5299768 |
tttcaactaatttgtgacacctctattatactcttttccttgctctacaaatcaacaaaaggaaacaatcatttgtatcaatgtattgatagttgcacat |
5299867 |
T |
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| Q |
318 |
accaagtgataactacatttccaaatgacatatcaaagtttagccgcatcctttg |
372 |
Q |
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| T |
5299868 |
accaagtgataactacatttccaaatgacatatcaaagtttagccacatcctttg |
5299922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 291
Target Start/End: Complemental strand, 20667404 - 20667355
Alignment:
| Q |
241 |
tattatactcttttccttgctctacaaatcaacaaaaggaaacaatcattt |
291 |
Q |
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|||||||||| |||||||||||||||||||| | |||||||||||||||| |
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| T |
20667404 |
tattatactcatttccttgctctacaaatcagc-gaaggaaacaatcattt |
20667355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 8860899 - 8860933
Alignment:
| Q |
18 |
gaaccaaaggctcaagcctgctccaaactccactt |
52 |
Q |
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|||||||||||||||| |||||||||||||||||| |
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| T |
8860899 |
gaaccaaaggctcaagactgctccaaactccactt |
8860933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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