View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21515_low_11 (Length: 292)
Name: NF21515_low_11
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 28469984 - 28470251
Alignment:
| Q |
19 |
gttatgttaggtttttgaaaattagttatacaatgccatgnnnnnnn----gcaggctatatctgtattgcatgaagttgtcaggctggaaccaaattta |
114 |
Q |
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| T |
28469984 |
gttatgttatgtttttgaaaattagttatacaatgccatgttgttttttttgcaggctatatctgtattgcatgaagttgtcaggctggaaccaaattta |
28470083 |
T |
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| Q |
115 |
cctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacgaaaatgaaatgggtttttacatgattactgctcatttgactccaaaag |
214 |
Q |
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| T |
28470084 |
cctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacgaaaatgaaatgggtttttacatgattactgctcatttgactccaaaag |
28470183 |
T |
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| Q |
215 |
atccaactctttggaagacgctttatgtgtggtccatgtaagatggttattcgtttttgtttcctttg |
282 |
Q |
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| T |
28470184 |
atccaactctttggaagacgctttatgtgtggtccatgtaagatggttattcgtttttgtttcctttg |
28470251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 278
Target Start/End: Original strand, 28487634 - 28487897
Alignment:
| Q |
19 |
gttatgttaggtttttgaaaattagttatacaatgccatgnnnnnnn----gcaggctatatctgtattgcatgaagttgtcaggctggaaccaaattta |
114 |
Q |
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| T |
28487634 |
gttatgtttggtttttgaaaattagttatacaatgctatgttggtttttttgcaggctatatctgtattgcatgaagttgtcaggctggagccaaattta |
28487733 |
T |
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| Q |
115 |
cctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacgaaaatgaaatgggtttttacatgattactgctcatttgactccaaaag |
214 |
Q |
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| T |
28487734 |
cctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacgaaaatgaaatgggtttttacatgattactgctcatttgactccaaaag |
28487833 |
T |
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| Q |
215 |
atccaactctttggaagacgctttatgtgtggtccatgtaagatggttattcgtttttgtttcc |
278 |
Q |
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| T |
28487834 |
atccaactctttggaagacgctttatgtgtggtccatgtaagatggttattcgtttttgtttcc |
28487897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 68 - 277
Target Start/End: Original strand, 30686562 - 30686771
Alignment:
| Q |
68 |
aggctatatctgtattgcatgaagttgtcaggctggaaccaaatttacctgactcgtatcacacccttggacttgtccatggtgcaattggggatcacga |
167 |
Q |
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| T |
30686562 |
aggctatagatgtgttgcatgaagttgtcaggctggaaccaaatttacctgacccgtatcacatccttggagctgtccatggtgcaattggggatcatga |
30686661 |
T |
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| Q |
168 |
aaatgaaatgggtttttacatgattactgctcatttgactccaaaagatccaactctttggaagacgctttatgtgtggtccatgtaagatggttattcg |
267 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||| || | |||||| | | ||| | ||||||||||||||||||||||||||| |
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| T |
30686662 |
aaatgaaatgggtttttacatgatttatgctcatttgactccaaaagattcatcactttgggaaaggctctttgtgtggtccatgtaagatggttattca |
30686761 |
T |
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| Q |
268 |
tttttgtttc |
277 |
Q |
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|||||||||| |
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| T |
30686762 |
tttttgtttc |
30686771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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