View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21515_low_14 (Length: 248)
Name: NF21515_low_14
Description: NF21515
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21515_low_14 |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0247 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0193 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 25139 - 25368
Alignment:
| Q |
1 |
tatattagctatatttttattctttttagataaaacattttagctaactaacttactcatatgtatgatacatataatatagatggacattgattgctgc |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25139 |
tatattagctatatttttattctctttagataaaacattttagctaactaacttactcatatgtatgatacatataatatagatggacattgattgctgc |
25238 |
T |
|
| Q |
101 |
aagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttgagaaaaaatgttgttttaggagcaaaagaaaacacagaaaaagag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25239 |
aagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttgagaaaaaatgttgttttaggagcaaaagaaaacacagaaaaagag |
25338 |
T |
|
| Q |
201 |
aaacctaatgaaatcattaaagctcttgat |
230 |
Q |
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||||||||||||||||||||||||| |||| |
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| T |
25339 |
aaacctaatgaaatcattaaagctcatgat |
25368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 33748866 - 33748709
Alignment:
| Q |
68 |
atacatataatatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttgagaaaaaatgtt |
167 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| || || | | |
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| T |
33748866 |
atacatataatatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttgaagaataaggat |
33748767 |
T |
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| Q |
168 |
gttttaggagcaaaagaaaacacagaaaaagagaaacctaatgaaatcattaaagctc |
225 |
Q |
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|||| | ||||||||||||| | ||||||||| || ||||| ||||| |||||||||| |
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|
| T |
33748766 |
gtttcaagagcaaaagaaaagaaagaaaaagataaccctaaggaaattattaaagctc |
33748709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 68 - 225
Target Start/End: Complemental strand, 33834986 - 33834829
Alignment:
| Q |
68 |
atacatataatatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttgagaaaaaatgtt |
167 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||| || || | | |
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| T |
33834986 |
atacatataatatagatggacgttgattgctgcaagacttcaaggtagaacagctaatgatgtgaaaaactattggaacactcatttgaagaataaggat |
33834887 |
T |
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| Q |
168 |
gttttaggagcaaaagaaaacacagaaaaagagaaacctaatgaaatcattaaagctc |
225 |
Q |
| |
|
|||| | ||||||||||||| | ||||||||| || ||||| ||||| |||||||||| |
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|
| T |
33834886 |
gtttcaagagcaaaagaaaagaaagaaaaagataaccctaaggaaattattaaagctc |
33834829 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 68 - 213
Target Start/End: Complemental strand, 33734394 - 33734249
Alignment:
| Q |
68 |
atacatataatatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttgagaaaaaatgtt |
167 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||| |||||| | ||||||||||||||||||| |||| |||| |||||| | || || ||| |
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| T |
33734394 |
atacatataatatagatggtcattgattgctgcaaggcttcctggtagaactgctaatgatgtgaaaaacttttggcacacacatttgcggaagaaggtt |
33734295 |
T |
|
| Q |
168 |
gttttaggagcaaaagaaaacacagaaaaagagaaacctaatgaaa |
213 |
Q |
| |
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|||| || | |||||||||| | |||||||||||||||||| |||| |
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| T |
33734294 |
gtttcagaaacaaaagaaaagaaagaaaaagagaaacctaaggaaa |
33734249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 33821724 - 33821637
Alignment:
| Q |
68 |
atacatataatatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttg |
155 |
Q |
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|
||||||||||||||||||| |||||||||||||||| |||| ||||| | ||||||||||||||||||||||||||||| |||||| |
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| T |
33821724 |
atacatataatatagatggtcattgattgctgcaaggcttcctagtagaacggctaatgatgtgaaaaactattggaacacacatttg |
33821637 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 160
Target Start/End: Complemental strand, 33904474 - 33904394
Alignment:
| Q |
80 |
tagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttgagaaa |
160 |
Q |
| |
|
||||||| |||||||||||||||| |||| ||||||| |||||||||||||||| || |||||| |||| ||||||||||| |
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| T |
33904474 |
tagatggtcattgattgctgcaaggcttccgggtagaacagctaatgatgtgaagaattattggcacacacatttgagaaa |
33904394 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 33865967 - 33865891
Alignment:
| Q |
78 |
tatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccattt |
154 |
Q |
| |
|
||||||||| ||||||||||||||||||| | ||||||| |||||||||||||||| || |||||| |||| ||||| |
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|
| T |
33865967 |
tatagatggtcattgattgctgcaagactcccgggtagaacagctaatgatgtgaagaattattggcacacacattt |
33865891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 81 - 148
Target Start/End: Complemental strand, 33762843 - 33762776
Alignment:
| Q |
81 |
agatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacac |
148 |
Q |
| |
|
|||||| |||||||||||||||| |||| |||||| |||| ||||||||||||||||||||| |||| |
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| T |
33762843 |
agatggtcattgattgctgcaaggcttcccggtagaacagcgaatgatgtgaaaaactattggcacac |
33762776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 33679896 - 33679826
Alignment:
| Q |
78 |
tatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacac |
148 |
Q |
| |
|
||||||||| ||||||||||||| || |||| ||||||| |||||||||||||||| || |||||| |||| |
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|
| T |
33679896 |
tatagatggtcattgattgctgcgaggcttccgggtagaacagctaatgatgtgaagaattattggcacac |
33679826 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 33698613 - 33698543
Alignment:
| Q |
78 |
tatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacac |
148 |
Q |
| |
|
||||||||| | |||||||||||||| |||| |||||| |||||||||||||||| || |||||| |||| |
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|
| T |
33698613 |
tatagatggtctttgattgctgcaaggcttccgggtaggacagctaatgatgtgaagaattattggcacac |
33698543 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 68 - 213
Target Start/End: Original strand, 22142 - 22287
Alignment:
| Q |
68 |
atacatataatatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacacccatttgagaaaaaatgtt |
167 |
Q |
| |
|
|||||||| || |||||| |||||||||||| ||| |||| |||||| |||||||||||||||||||||||||||| || ||||| |||| || ||| |
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|
| T |
22142 |
atacatatcgtacagatggtcattgattgctggaaggcttccaggtagaacagctaatgatgtgaaaaactattggaatacacatttacgaaagaaggtt |
22241 |
T |
|
| Q |
168 |
gttttaggagcaaaagaaaacacagaaaaagagaaacctaatgaaa |
213 |
Q |
| |
|
| | || |||||||||||| | ||||||||||||| ||||||||| |
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|
| T |
22242 |
gaatcagaagcaaaagaaaaaaaagaaaaagagaaatctaatgaaa |
22287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 114178 - 114301
Alignment:
| Q |
51 |
acttactcatatgtatgatacatataatatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacaccc |
150 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||| |||||||||| | ||| |||| || |||| ||||||||||||| |||||||||||| |||| | |
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|
| T |
114178 |
acttactcatatattggataaatataatatagatggtcattgattgcgggaaggcttccggctagaacagctaatgatgtcaaaaactattggcacacac |
114277 |
T |
|
| Q |
151 |
atttgagaaaaaatgttgttttag |
174 |
Q |
| |
|
||||||| || || |||||||||| |
|
|
| T |
114278 |
atttgaggaagaaggttgttttag |
114301 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 21305953 - 21305882
Alignment:
| Q |
77 |
atatagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacac |
148 |
Q |
| |
|
|||||||||| |||||||||||| ||| |||| ||||||| |||||||||||||||| ||||||||| |||| |
|
|
| T |
21305953 |
atatagatggtcattgattgctggaaggcttccgggtagaacagctaatgatgtgaagaactattggcacac |
21305882 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 80 - 148
Target Start/End: Original strand, 5471194 - 5471262
Alignment:
| Q |
80 |
tagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacac |
148 |
Q |
| |
|
||||||| |||||||||||| ||| |||| ||||||| |||||||| ||||||||||||||||||||| |
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|
| T |
5471194 |
tagatggtcattgattgctggaaggcttccgggtagaacagctaatagtgtgaaaaactattggaacac |
5471262 |
T |
|
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Target: scaffold0001 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 148
Target Start/End: Complemental strand, 148859 - 148791
Alignment:
| Q |
80 |
tagatggacattgattgctgcaagacttcagggtagatcagctaatgatgtgaaaaactattggaacac |
148 |
Q |
| |
|
||||||| |||||||||||| ||| |||| ||| ||| ||||||||||||| || ||||||||| |||| |
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|
| T |
148859 |
tagatggtcattgattgctggaaggcttccgggaagaacagctaatgatgtaaagaactattggcacac |
148791 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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